DRSC/TRiP Functional Genomics Resources

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Protein Alignment cmet and kif5b

DIOPT Version :9

Sequence 1:NP_524993.3 Gene:cmet / 53561 FlyBaseID:FBgn0040232 Length:2189 Species:Drosophila melanogaster
Sequence 2:NP_001122126.1 Gene:kif5b / 100038146 XenbaseID:XB-GENE-854737 Length:962 Species:Xenopus tropicalis


Alignment Length:1061 Identity:281/1061 - (26%)
Similarity:456/1061 - (42%) Gaps:219/1061 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SIQVCIKVRPCEPGLTSLWQVKERRSIHLADSHAE--------PYVFDYVFDEGASNQEVFDRMA 64
            ||:|..:.||......:      |...::|....|        |||||.||....|.::|::..|
 Frog     8 SIKVMCRFRPLNDSEVT------RGDKYVAKFQGEDTVVMASKPYVFDRVFQSNTSQEQVYNACA 66

  Fly    65 KHIVHACMQGFNGTIFAYGQTSSGKTYTMMGDEQNP---GVMVLAAKEIFQQISSETER-DFLLR 125
            |.||...:.|:|||||||||||||||:||.|...:|   |::....::||..|.|..|. :|.::
 Frog    67 KAIVKDVLDGYNGTIFAYGQTSSGKTHTMEGKLHDPDGMGIIPRIVQDIFNYIYSMDENLEFHIK 131

  Fly   126 VGYIEIYNEKIYDLLNKKNQDLKIHESGNGIVNV-NCEECIITSEVDLLRLLCLGNKERTVGETN 189
            |.|.|||.:||.|||:....:|.:||..|.:..| .|.|..:.|..:::..:..|...|.|..||
 Frog   132 VSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTN 196

  Fly   190 MNERSSRSHAIFKIIIESRKSDHSDDDAVIQSVLNLVDLAGSERADQTGARGARLKEGGHINKSL 254
            |||.|||||:||.|.:   |.:::..:..:...|.||||||||:..:|||.||.|.|..:|||||
 Frog   197 MNEHSSRSHSIFLINV---KQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSL 258

  Fly   255 LFLSNVIKSLSENADNRFTNYRDSKLTRILQASLGGNAFTSIICTIKPSIME--ESQSTLSFATR 317
            ..|.|||.:|:|.  :.:..|||||:|||||.|||||..|:|:....||...  ||:|||.|..|
 Frog   259 SSLGNVISALAEG--SVYIPYRDSKMTRILQDSLGGNCRTTIVICCSPSAYNEAESKSTLLFGQR 321

  Fly   318 AKKIRIKPQVNEMVSDATMMKRLEREIKVLKDKLAEEERKNENQQKVEHLERQIKHDMHKIICGH 382
            ||.|:....||..::.....|:.|:          |:|:....:..|:.||.::..         
 Frog   322 AKTIKNTVCVNVELTAEQWKKKYEK----------EKEKTKSLRSTVQWLENELNR--------- 367

  Fly   383 SLSDKGQQKRRRTWCPTASGSHLELAETGTTEDRIDQFPKVSHLPKPVFFHTSNAGKRWDNIPKT 447
                         |         ...||...|::.|:..                          
 Frog   368 -------------W---------RKGETVPIEEQYDKEK-------------------------- 384

  Fly   448 INILGSLDIGTESNSISEEFLPAECIDFGSPRPDVLKPMLTIRQLPDLPLTPKGPLTTDKIKKEI 512
                .::|.....|.::.|                 ||.:|:           ....||..:::.
 Frog   385 ----ANMDAFVVDNFVNNE-----------------KPAVTL-----------AANFTDAERRKC 417

  Fly   513 QDLQMFTSLEKHFEVECEEV---QGLKEKLAEVTAQRDNLEQESLAEKER--YDALEKEVTSLRA 572
            :  :..|.|.|..:.:.||:   ..|.|||     ::..|:||.|....|  .|.::.|:..|:|
 Frog   418 E--EEVTKLYKQLDDKDEEINQQSQLVEKL-----KQQMLDQEELLASTRRDQDNMQAELNRLQA 475

  Fly   573 DNEAANSKISELEEKLSTL--KQTMRIMEVENQVAVGLEFEF---EAHKKSSKL-RVDDLLSALL 631
            :|:|:..::.|:.:.|..|  ....:..|||::   ..|::.   |.::||..| .:|..|..| 
 Frog   476 ENDASKEEVKEVLQALEELAVNYDQKSQEVEDK---SKEYDILSEELNQKSVILSSIDSELQKL- 536

  Fly   632 EKESTIESLQKSLDNLTRDVLRNSKEGHMLSIAPEQEDIAGDSICNKCEELEKLIADLESKKNSC 696
             ||.|....:::.:.:| .:|::..|   :.||....|.....:....:| |..:|.|...|...
 Frog   537 -KEMTNHQKKRATEMMT-SLLKDLAE---IGIAVGGNDGKQPEVSGMIDE-EFTVARLYISKMKS 595

  Fly   697 E-------CDQLRLEIVSVRDKLESVESAFNLASSEIIQKATDCERLSKELSTSQNAFGQLQERY 754
            |       |.||.........|:|..|.........|.|.....:.|::.:...:.....|:|..
 Frog   596 EVKTMVKRCKQLEGTQSESNKKMEENEKELAACQLRISQHEAKIKSLTEYVQNVEQKKRHLEESV 660

  Fly   755 DALDQQWQAQQAGITTLHEKHEHVQEKYQKLQEEYEQLESRARSASSAEFQRLQNDNTKFQADIA 819
            |:|:::....:|            |||..::::|:......|.....|..:::|:.....|..::
 Frog   661 DSLNEELVKLRA------------QEKVHEMEKEHLNKVQTATEVKHAVEEQIQSHRETHQKQLS 713

  Fly   820 SLNERLEEAQNMLTEVQNSESTV-----------EKLRIQNHELTAKIKEL---ETNFEEMQREY 870
            :|.:.:|..:.::||:|:....:           |||:..:.|.:.|:.||   :...|:.:::.
 Frog   714 ALRDEIETKEKVITELQDQNQKMVLEQERLRVEHEKLKYADQEKSKKLHELTVMQDRREQARQDL 778

  Fly   871 DCLSNQLMESVQENDALREEIKQRPTSHVEESMRSSGISSDFDE------QKQDINLL-HQFVQL 928
            ..|...:.:.:|....||:...|..|:.|::|     ...|.|:      |||.|:.| :...||
 Frog   779 KGLEETVAKELQTLHNLRKLFVQDLTTRVKKS-----AEMDSDDTGGSAAQKQKISFLENNLEQL 838

  Fly   929 SESVQQI---------ELQHHSGISRLFRANQMKLDQSEPGLKLCLESA-----EYIEEDNRQSD 979
            ::..:|:         ||..   :.:..||...::...|..||...|:|     .|.:|.:|..:
 Frog   839 TKVHKQLVRDNADLRCELPK---LEKRLRATAERVKALESALKEAKENASRDRKRYQQEVDRIKE 900

  Fly   980 ATEPICLKGFLKR-HRFQIKR 999
            |...   |...:| |..||.:
 Frog   901 AVRS---KNMARRGHSAQIAK 918

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cmetNP_524993.3 KISc 8..328 CDD:214526 139/334 (42%)
Motor_domain 8..321 CDD:277568 138/327 (42%)
Smc <680..1449 CDD:224117 77/363 (21%)
TMPIT 779..>867 CDD:285135 21/101 (21%)
Smc 1042..1910 CDD:224117
kif5bNP_001122126.1 KISc_KHC_KIF5 6..325 CDD:276820 138/327 (42%)
Smc <409..792 CDD:224117 88/411 (21%)
COG4372 709..>914 CDD:226809 48/215 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000669
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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