DRSC/TRiP Functional Genomics Resources

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Protein Alignment cic and ROX1

DIOPT Version :9

Sequence 1:NP_001262755.1 Gene:cic / 53560 FlyBaseID:FBgn0262582 Length:2150 Species:Drosophila melanogaster
Sequence 2:NP_015390.1 Gene:ROX1 / 856178 SGDID:S000006269 Length:368 Species:Saccharomyces cerevisiae


Alignment Length:298 Identity:69/298 - (23%)
Similarity:106/298 - (35%) Gaps:78/298 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   687 KESQRRGYCSRHLNQKGNTSAL----PSSTGPGRLLSDSRSSSKTQIDEDTSR---DSETSPNYR 744
            ||.|::......|.|..|.:.:    ..|..|...:|.| :|.:.|::.|..|   .|..:.||.
Yeast   109 KEQQQQKQSQPQLQQPFNNNIVLMKRAHSLSPSSSVSSS-NSYQFQLNNDLKRLPIPSVNTSNYM 172

  Fly   745 VKG-------RYDQEETDAAAMLVSLSSSRSATPSYTSPVNHAGASPLNAIAHSPVNVSATHRQN 802
            |..       .:|:...|    |..|||..::.|.|::|.:.:.......:|.:....::|.:..
Yeast   173 VSRSLSGLPLTHDKTARD----LPQLSSQLNSIPYYSAPHDPSTRHHYLNVAQAQPRANSTPQLP 233

  Fly   803 FFTPIANQSQQQQQQQPVAVPLDSKWKTTPSPVLYNANNNSS---NNNTSSSNNNNNSNWEVGSN 864
            |.:.|.|.|    .|.||.....|....|.||..::::.|||   ||..:|.||:|         
Yeast   234 FISSIINNS----SQTPVTTTTTSTTTATSSPGKFSSSPNSSVLENNRLNSINNSN--------- 285

  Fly   865 SNTHVAATAAATSTVGAQPLPPQTTP----------VSLVMHAPPPQQQPLQQQH---------- 909
                             |.|||...|          ..|....|....:||....          
Yeast   286 -----------------QYLPPPLLPSLQDFQLDQYQQLKQMGPTYIVKPLSHTRNNLLSTTTPT 333

  Fly   910 HHHQPPPPPPASLPAPSAPPTSGSSSSHNSVGHATSVI 947
            |||.|      .:|..:.|.....:||:..|...||::
Yeast   334 HHHIP------HIPNQNIPLHQIINSSNTEVTAKTSLV 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cicNP_001262755.1 DUF4819 349..431 CDD:292708
SOX-TCF_HMG-box 1231..1302 CDD:238684
ROX1NP_015390.1 MATA_HMG-box 9..88 CDD:238685
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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