DRSC/TRiP Functional Genomics Resources

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Protein Alignment cic and SOX3

DIOPT Version :9

Sequence 1:NP_001262755.1 Gene:cic / 53560 FlyBaseID:FBgn0262582 Length:2150 Species:Drosophila melanogaster
Sequence 2:NP_005625.2 Gene:SOX3 / 6658 HGNCID:11199 Length:446 Species:Homo sapiens


Alignment Length:489 Identity:100/489 - (20%)
Similarity:156/489 - (31%) Gaps:151/489 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1149 VFETTTPGISANSKKQTAAMRLPTHNS-NIRKLEECHDDG------AAGAPATSAAKRRSQSLSA 1206
            :|....|...|.|...|.|..||.... ::.:.|..:..|      ..|.||......:|.:.:|
Human    50 LFTVAAPAPGAPSPPATLAHLLPAPAMYSLLETELKNPVGTPTQAAGTGGPAAPGGAGKSSANAA 114

  Fly  1207 LQQQQQQQQQAGAAGTAAGQPANKKIRRPMNAFMIFSKKHRKMVHKKHPNQDNRTVSKILGEWWY 1271
            ...........||:|...|...: :::|||||||::|:..|:.:..::|...|..:||.||..|.
Human   115 GGANSGGGSSGGASGGGGGTDQD-RVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWK 178

  Fly  1272 ALKPEQKAQYHELASSVKDAHFKLHPEWKWCSKDRRKSST----------STATPGGKASGAAGT 1326
            .|...:|..:.:.|..::..|.|.:|::|:  :.|||:.|          |...|.|.|:.||..
Human   179 LLTDAEKRPFIDEAKRLRAVHMKEYPDYKY--RPRRKTKTLLKKDKYSLPSGLLPPGAAAAAAAA 241

  Fly  1327 GDAKQRLVSVDGSDSLEHDMCPSTPGGSGSCGGQGISSDLQGDIIPLTIDNYNSTCDEAPTTISM 1391
            ..|.               ...|:|.|.|.                 .:|.|        |.::.
Human   242 AAAA---------------AAASSPVGVGQ-----------------RLDTY--------THVNG 266

  Fly  1392 KGNGNGKLMKNELPSDEDEQMLVVEEEQQQQTVKKIDLHCRERVNDSDMDDTPFDYRKQQPEANQ 1456
            ..||...|::.:|...:...|...........:.:.|:             ....|....|...|
Human   267 WANGAYSLVQEQLGYAQPPSMSSPPPPPALPPMHRYDM-------------AGLQYSPMMPPGAQ 318

  Fly  1457 R----SAEEHSTSGANGQAINAPPLSG---GEREITLKPKAIKAHPVLESNMLPYTQMSIYTQYT 1514
            .    :|...:.||..|.|.:|...:.   |::..|....|..|           ..||:     
Human   319 SYMNVAAAAAAASGYGGMAPSATAAAAAAYGQQPATAAAAAAAA-----------AAMSL----- 367

  Fly  1515 SPKNPIGVTPFQPTGGAFKSMPISPKGS-----------------------GGKPEDAGSLQAHI 1556
                       .|.|...||.|.||..:                       ||...||.|     
Human   368 -----------GPMGSVVKSEPSSPPPAIASHSQRACLGDLRDMISMYLPPGGDAADAAS----- 416

  Fly  1557 KQEDIKQEPPSP-------YKLNNGSGSASGGGV 1583
                     |.|       ::...|:|:|..|.|
Human   417 ---------PLPGGRLHGVHQHYQGAGTAVNGTV 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cicNP_001262755.1 DUF4819 349..431 CDD:292708
SOX-TCF_HMG-box 1231..1302 CDD:238684 23/70 (33%)
SOX3NP_005625.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 29..48
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 87..140 10/53 (19%)
SOX-TCF_HMG-box 138..209 CDD:238684 23/72 (32%)
SOXp 208..302 CDD:289133 23/135 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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