DRSC/TRiP Functional Genomics Resources

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Protein Alignment cic and sox12

DIOPT Version :9

Sequence 1:NP_001262755.1 Gene:cic / 53560 FlyBaseID:FBgn0262582 Length:2150 Species:Drosophila melanogaster
Sequence 2:NP_001025449.1 Gene:sox12 / 562381 ZFINID:ZDB-GENE-040724-33 Length:355 Species:Danio rerio


Alignment Length:263 Identity:64/263 - (24%)
Similarity:102/263 - (38%) Gaps:65/263 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1227 PANK----------KIRRPMNAFMIFSKKHRKMVHKKHPNQDNRTVSKILGEWWYALKPEQKAQY 1281
            |:||          .|:|||||||::|:..|:.:.::.|:..|..:||.||:.|..|...:|..:
Zfish    38 PSNKDPNWCKTPTGHIKRPMNAFMVWSQIERRKIMEQWPDMHNAEISKRLGKRWKLLPDYEKIPF 102

  Fly  1282 HELASSVKDAHFKLHPEWKWCSKDRRKSSTSTATPGGKASGAAGTGDAKQRLVSVDGSDSLEHDM 1346
            .:.|..::..|...:|::|:  :.|:||..||....|                     :.|....
Zfish   103 IKEAERLRLKHMADYPDYKY--RPRKKSKGSTPVKLG---------------------EKLPMKS 144

  Fly  1347 CPSTPGGSG--SCGGQGISSDLQGDIIPLTIDNYNSTCDEAPTTISMKGNGNGKLMK--NELPSD 1407
            ....||.|.  ||.|..|.                      |.:...|.|.:....|  :|..||
Zfish   145 SKPLPGRSSGLSCKGLKIK----------------------PASSKHKMNFSSNKYKSYSESMSD 187

  Fly  1408 EDEQMLVVEEEQQQQ----TVKKIDLHCRERVNDSDMDDTPFDYRKQQPEANQRSAEEHSTSGAN 1468
            :|...:.:|....||    |.....||.:..|...|....| :.|.:.| .:|.|:.:..:|.:.
Zfish   188 DDTMDVNLESPVTQQDDRNTSSHFVLHQQATVQSEDQQPIP-ELRVKVP-ISQTSSIQSLSSDSE 250

  Fly  1469 GQA 1471
            .||
Zfish   251 CQA 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cicNP_001262755.1 DUF4819 349..431 CDD:292708
SOX-TCF_HMG-box 1231..1302 CDD:238684 23/70 (33%)
sox12NP_001025449.1 SOX-TCF_HMG-box 52..123 CDD:238684 23/72 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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