DRSC/TRiP Functional Genomics Resources

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Protein Alignment cic and Sox21b

DIOPT Version :10

Sequence 1:NP_001262755.1 Gene:cic / 53560 FlyBaseID:FBgn0262582 Length:2150 Species:Drosophila melanogaster
Sequence 2:NP_001261829.1 Gene:Sox21b / 39569 FlyBaseID:FBgn0042630 Length:587 Species:Drosophila melanogaster


Alignment Length:785 Identity:160/785 - (20%)
Similarity:233/785 - (29%) Gaps:281/785 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   861 VGSNSNTHVAATAAATSTVGAQPLPPQTTPVSL-VMHAPPPQQQPLQQQHHH-HQPPPPPPASLP 923
            :||...||.....||  .|..|....|.:...| ..|....||..|..|||| ||.|        
  Fly    24 LGSGGGTHHLGQLAA--AVHQQQQQQQQSDQGLGHSHHLHGQQLSLNHQHHHPHQSP-------- 78

  Fly   924 APSAPPTSGSSSSHNSVGHATSVIRISSSQQQHQQQQQHQQQAHPHVVVSGGQTFHPVIVDATQL 988
                                           |||||.||                ||...:::..
  Fly    79 -------------------------------QHQQQHQH----------------HPCSSNSSNG 96

  Fly   989 SVPLPPTTVSFHQPNTPTSTAASVASMSQDKMLAKNGYNAPWFKLLPHMTPMSKASPAPVTPTLT 1053
            |            ||..|...                       |.||..               
  Fly    97 S------------PNGSTGLG-----------------------LHPHSA--------------- 111

  Fly  1054 TSASSYNVVMMQQQQQHQQLQQQQQLQQQQQ--SPP--QMPLNHNNNHLIVSAPLSSPGKPLNCS 1114
                      :.....|.||.|.....||||  .||  ....:|::....:|....|.|.     
  Fly   112 ----------LHLAHHHSQLHQHHPAGQQQQHSQPPVSSSSTSHHSQSQALSHQTHSNGS----- 161

  Fly  1115 MNDAKVAAAAAAAAVANQRQKQQQEEPDDQLDDDVFETTTPGISANSKKQTAAMRLPTHNSNIRK 1179
             :.....:|:.|.:||..........|                :::|....||.....|||....
  Fly   162 -SQLGGGSASGAGSVAGGAANSHHSAP----------------ASSSVMAAAAAAHLHHNSQASP 209

  Fly  1180 LEECHDDGAAGAPATSAAKRRSQSLSALQQQQQQQQQAGAAGTAAGQPANKKIRRPMNAFMIFSK 1244
            :...|.:  .|:...|.:.......|.:.|...::|.            .:.|:|||||||::|:
  Fly   210 ISNLHQN--MGSLMNSGSSASDVFFSLMIQNTTKRQN------------EEHIKRPMNAFMVWSR 260

  Fly  1245 KHRKMVHKKHPNQDNRTVSKILGEWWYALKPEQKAQYHELASSVKDAHFKLHPEWKWCSKDRRKS 1309
            ..|:.:.:.:|...|..:||.||..|..|..|:|..:.:.|..::..|.|.||::|:  :.|||.
  Fly   261 LQRRKIAQDNPKMHNSEISKRLGAEWKLLTEEEKRPFIDEAKRLRAMHMKEHPDYKY--RPRRKP 323

  Fly  1310 ST---------------------STATPGGKASGAAGTGDAKQRLVSVDGSDSLEHDMCPSTPGG 1353
            ..                     :..|||..|.|...   |...|.|..|..|     .|:|.  
  Fly   324 KALRRDGYPYPMPYPSVPVEALRAGITPGYFAPGPTA---AAYHLGSHLGQTS-----TPTTT-- 378

  Fly  1354 SGSCGGQGISSDLQGDIIPLTIDNYNSTCDEA--------PTTISMKGNGNGKLMKNELPSDE-- 1408
            ..:..|       |.|...|...:|.|...:|        |:.:: |...:.|:.::...:..  
  Fly   379 QATLSG-------QMDKFALERSSYLSNSSQASAYSAYLDPSVLT-KAYFDSKMYQDRAANYAFD 435

  Fly  1409 ------DEQMLVVEEEQQQQTVKKIDLHCRERVNDSDMDDTPFDYRKQQPEANQRSAEEHSTSGA 1467
                  .:|......:||||                       ..::||.:..|........||.
  Fly   436 ISKIYGAQQHAAAHHQQQQQ-----------------------QQQQQQQQQQQLLLSGGGGSGG 477

  Fly  1468 NGQAI--NAPPLSG-GEREITLKPKAIKAHPVLESNMLPYTQMSIYTQYTSPKNPIGVTPFQPTG 1529
            .|.|.  |....|| .:|:.|.:.:|:::.|.|.|   |......|.||.           |..|
  Fly   478 GGSASSHNNNSSSGLDDRDATPQLEAVESKPHLHS---PSDVGLDYAQYA-----------QQYG 528

  Fly  1530 GAFKSMPISPKGSGGKPEDAGSLQAHIKQEDIKQEPPSPYKLNNGSGSASGGG------VVSAPP 1588
            |...:......|.|......||                   ...|||.|:...      |:..||
  Fly   529 GQLAAAAGGAVGGGAAGAAGGS-------------------AGGGSGGATAADFRRPLTVIFXPP 574

  Fly  1589 PNSGS 1593
            .::||
  Fly   575 SSNGS 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cicNP_001262755.1 DUF4819 349..432 CDD:465014
HMG-box_CIC-like 1231..1308 CDD:438806 27/76 (36%)
Sox21bNP_001261829.1 HMG-box_SoxB 246..325 CDD:438790 29/80 (36%)
Blue background indicates that the domain is not in the aligned region.

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