DRSC/TRiP Functional Genomics Resources

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Protein Alignment cic and Sox14

DIOPT Version :9

Sequence 1:NP_001262755.1 Gene:cic / 53560 FlyBaseID:FBgn0262582 Length:2150 Species:Drosophila melanogaster
Sequence 2:NP_001286801.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster


Alignment Length:735 Identity:146/735 - (19%)
Similarity:243/735 - (33%) Gaps:219/735 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   986 TQLSVPLPPTTVSFHQPNTPTSTAASVASMSQDKMLAKNGYNAPWFKLLPHMTPMSKASPAPVT- 1049
            |:..:.|.|.||    |..|.:|.|..|:::     .:..:.||.....||..|....||:|.: 
  Fly    10 TEPPLSLRPGTV----PTVPATTPARPATIT-----IQRRHPAPKADSTPHTLPPFSPSPSPASS 65

  Fly  1050 ----PTLTTSASSYNVVMMQQQQQHQQLQQQQQLQQQQQSPPQMPLNHNNNHLIVSAPLSSPGKP 1110
                |..|..|                          |::..|..:.|       .|.::||..|
  Fly    66 PSPAPAQTPGA--------------------------QKTQSQAAITH-------PAAVASPSAP 97

  Fly  1111 LNCSMNDAKVAAAAAAAAVANQRQKQQQEEPDDQLDDDVFETTTPGISANSKK-QTAAMRLPTHN 1174
                     |||||          .:..:.|:.:.......|.:...|...:: :....|.|:|:
  Fly    98 ---------VAAAA----------PKTPKTPEPRSTHTHTHTHSQHFSPPPRESEMDGERSPSHS 143

  Fly  1175 SNIRKLEECHDD-----GAAGAPATSAAKRRSQSLSALQQQQQQQQQAGAAGTAAGQPANKKIRR 1234
            .:...|.....|     |:|..|..|:.                 ..:.|..|....|.:  |:|
  Fly   144 GHEMTLSMDGIDSSLVFGSARVPVNSST-----------------PYSDATRTKKHSPGH--IKR 189

  Fly  1235 PMNAFMIFSKKHRKMVHKKHPNQDNRTVSKILGEWWYALKPEQKAQYHELASSVKDAHFKLHPEW 1299
            ||||||::|:..|:.:.::.|:..|..:||.||..|..|..:.|..|...|..::..|...:|.:
  Fly   190 PMNAFMVWSQMERRKICERTPDLHNAEISKELGRRWQLLSKDDKQPYIIEAEKLRKLHMIEYPNY 254

  Fly  1300 KWCSKDRRKSSTSTATPGGKASGAAGTGDAKQR-----LVSVDGSDSLEHDMCPST---PGGSGS 1356
            |:..:.::..|..:..|...|.|.....|....     .::::|:.:.......||   ..||.|
  Fly   255 KYRPQKKQTRSPGSLKPNQDADGCEARNDTTNNNNSLTTLAINGTTTAGRKSKRSTSTCQSGSAS 319

  Fly  1357 CGGQGISSDL-----------------QGDIIPLTIDNY---------------NSTCDE-APTT 1388
            ...:..|.|.                 ..|||..:.||.               |:.||| ..:.
  Fly   320 KRLRNDSGDTSSKPKYEVKMESAEQLNSADIILPSADNLISYQSSEYLPLSTLSNADCDEKLHSE 384

  Fly  1389 ISMKGNGNGKLMKNE-------------LPSDEDEQMLV-----VEEEQQQQTVKKID------- 1428
            :|     :|.|...|             |..:||.|:.|     .:..|...|...:|       
  Fly   385 LS-----SGPLESRENLSEVVNRFLPLFLGGNEDSQLGVSSLTQSQHNQSDPTAGLMDNISDISP 444

  Fly  1429 LHCRERVNDSDMDDTPFDYRKQQPEANQRSAEEHSTSGANGQAINAPPLSGGEREIT-------- 1485
            ::.||.:.:..|...|  |.:..|.::..:.:..|:| ..|:.:|.|.....:..:.        
  Fly   445 INDREELTEEVMRYLP--YLEVNPSSDGLTLKVESSS-LLGKPLNEPVFDSEDNIVNDANLHSAS 506

  Fly  1486 --LKPKAIKAHPVLESN--------------MLPYT---QMSIYTQYTSPKNPIGVTPFQPTGGA 1531
              :.|....:|.....:              :.|.|   .|:....|..|  ..|.|.||  ...
  Fly   507 HQIPPYVPDSHDCFAEDCGGDSSSHQVEFEVVRPQTVTMTMTCTLPYGGP--DAGHTTFQ--ADD 567

  Fly  1532 FKSMPI--------------SPK----GSGGKPEDA-GSLQAHIKQE----DIKQEPPSPYKLNN 1573
            |.::|.              ||:    ||.....|| ||...:.:|:    .|:......|..::
  Fly   568 FNAIPSAAEDSECSILTTSNSPQIGFNGSSFVEADAIGSTCTYAQQDYTGSVIETHNDLNYAAHD 632

  Fly  1574 GSGSASGGGVVSAPPPNSGS 1593
            .:|:.........||..:||
  Fly   633 NNGALLAYTFEDLPPQPTGS 652

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cicNP_001262755.1 DUF4819 349..431 CDD:292708
SOX-TCF_HMG-box 1231..1302 CDD:238684 24/70 (34%)
Sox14NP_001286801.1 SOX-TCF_HMG-box 186..257 CDD:238684 24/72 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I3058
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.910

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