DRSC/TRiP Functional Genomics Resources

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Protein Alignment cic and Sox18

DIOPT Version :10

Sequence 1:NP_001262755.1 Gene:cic / 53560 FlyBaseID:FBgn0262582 Length:2150 Species:Drosophila melanogaster
Sequence 2:NP_001019952.1 Gene:Sox18 / 311723 RGDID:1311718 Length:377 Species:Rattus norvegicus


Alignment Length:321 Identity:80/321 - (24%)
Similarity:127/321 - (39%) Gaps:67/321 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1187 GAA----GAPATSAAKRRSQSLSALQQQQQQQQQAGAAGTAAG--QPANK-KIRRPMNAFMIFSK 1244
            |||    |.|.|:.:.....|.|:|.:...:..::|..|...|  |.|:: :|||||||||:::|
  Rat    27 GAAAEPRGLPVTNVSPTSPASPSSLPRSPPRSPESGRYGFGRGERQTADELRIRRPMNAFMVWAK 91

  Fly  1245 KHRKMVHKKHPNQDNRTVSKILGEWWYALKPEQKAQYHELASSVKDAHFKLHPEWKWCSKDRRKS 1309
            ..||.:.:::|:..|..:||:||:.|..|...:|..:.|.|..::..|.:.||.:|:  :.|||.
  Rat    92 DERKRLAQQNPDLHNAVLSKMLGKAWKELNTAEKRPFVEEAERLRVQHLRDHPNYKY--RPRRKK 154

  Fly  1310 S-------------------TSTATPGGKASGAA--------------GTGDAKQRLVSVDGSDS 1341
            .                   ::...|...|||:|              |.|........:||.:|
  Rat   155 QARKVRRLEPGLLLPGLVQPSAPPEPFAAASGSARSFRELPTLGAEFDGLGLPTPERSPLDGLES 219

  Fly  1342 LEHDMCPSTPGGSGSCGGQGISSDLQGDIIPLTIDNYNSTCDE----APTTISMKGNGNGKL--- 1399
            .|....| .|.....|..:...:....::.......|.|:..|    ||....:.|...|.|   
  Rat   220 GEASFFP-PPLAPEDCALRAFRAPYAPELARDPSFCYGSSLAEALRTAPPAAPLAGLYYGTLGTP 283

  Fly  1400 --MKNELPSDEDEQMLVVEEEQQQQTVKKIDLHCRERVNDSDMDDTPFDY----RKQQPEA 1454
              ..|.|....:...|    |..:|.....||.       :|:|.|.||.    .:.:|:|
  Rat   284 GPFPNPLSPPPEAPSL----EGTEQLEPTADLW-------ADVDLTEFDQYLNCSRTRPDA 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cicNP_001262755.1 DUF4819 349..432 CDD:465014
HMG-box_CIC-like 1231..1308 CDD:438806 28/76 (37%)
Sox18NP_001019952.1 HMG-box_SoxF_SOX18 76..155 CDD:438851 30/80 (38%)
Sox17_18_mid 191..239 CDD:463454 9/48 (19%)
Blue background indicates that the domain is not in the aligned region.

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