DRSC/TRiP Functional Genomics Resources

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Protein Alignment cic and sox11a

DIOPT Version :10

Sequence 1:NP_001262755.1 Gene:cic / 53560 FlyBaseID:FBgn0262582 Length:2150 Species:Drosophila melanogaster
Sequence 2:NP_571411.1 Gene:sox11a / 30602 ZFINID:ZDB-GENE-980526-395 Length:354 Species:Danio rerio


Alignment Length:399 Identity:88/399 - (22%)
Similarity:131/399 - (32%) Gaps:128/399 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1222 TAAGQPANKKIRRPMNAFMIFSKKHRKMVHKKHPNQDNRTVSKILGEWWYALKPEQKAQYHELAS 1286
            ||.|.     |:|||||||::||..|:.:.::.|:..|..:||.||:.|..||..:|..:...|.
Zfish    36 TATGH-----IKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAE 95

  Fly  1287 SVKDAHFKLHPEWKWCSKDRRK--SSTSTATPGGKASGAAGTGDAKQRLVSVDGSDSLEHDMCP- 1348
            .::..|...:|::|:..|.:.|  ||:..:.|..:..........|                || 
Zfish    96 RLRLKHMADYPDYKYRPKKKPKLDSSSKPSAPSPEKCSKTSKSSKK----------------CPK 144

  Fly  1349 ---STPGGSGSCGGQGISSDLQGDIIPLTIDNYNSTCDEAPTTISMKGNGNGKLMKNELPSDEDE 1410
               :..|...|..|.|              |.|.....:...|:.:|...          :||| 
Zfish   145 LKANKTGSKSSSHGYG--------------DEYAFKSTKVSKTVHIKSEF----------TDED- 184

  Fly  1411 QMLVVEEEQQQQTVKKIDLHCRERVNDSDMDDTPFDYRKQQPEANQRSAEEHSTSGANGQAINAP 1475
                                        |.||:..|.|.:..|     .||......|...:.|.
Zfish   185 ----------------------------DDDDSEEDSRVRVKE-----EEEDPIRAYNVAKVPAS 216

  Fly  1476 PLSGGEREITLKPKAIKAHPVLESNMLPYTQMSIYTQYTSPKNPIGVTPFQPTGGAFKSMPISPK 1540
            |......|    .:....:..:.:|.|.|...:|..|  |...|..|:|     .:.:|:..|..
Zfish   217 PTLSSSTE----SEGASMYEEVRNNRLYYNFKNITKQ--STMYPASVSP-----ASSRSVSTSSS 270

  Fly  1541 GSGGKPEDAGSLQAHIKQEDIKQEPPSPYKLNNGSGSASGGGVVSAPPPN--------------S 1591
            .|    |||..|.             ..:.||..| ||....:.|..|.|              .
Zfish   271 SS----EDADDLL-------------FDFSLNFAS-SAQSSELGSQNPGNLSLSLVDKELESFSE 317

  Fly  1592 GSVGAIFNF 1600
            ||:|:.|.|
Zfish   318 GSLGSHFEF 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cicNP_001262755.1 DUF4819 349..432 CDD:465014
HMG-box_CIC-like 1231..1308 CDD:438806 26/76 (34%)
sox11aNP_571411.1 HMG-box_SF 30..107 CDD:469606 26/75 (35%)
Blue background indicates that the domain is not in the aligned region.

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