DRSC/TRiP Functional Genomics Resources

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Protein Alignment cic and Bbx

DIOPT Version :9

Sequence 1:NP_001262755.1 Gene:cic / 53560 FlyBaseID:FBgn0262582 Length:2150 Species:Drosophila melanogaster
Sequence 2:XP_008766856.1 Gene:Bbx / 303970 RGDID:1309769 Length:938 Species:Rattus norvegicus


Alignment Length:1134 Identity:208/1134 - (18%)
Similarity:355/1134 - (31%) Gaps:432/1134 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly  1175 SNIRKLEECHDDGAAGAPATSAAK------RRSQSLSALQQQQQQQQ-------------QAGAA 1220
            ||..|......:||...|.....:      ::....|..:::.::::             :....
  Rat     4 SNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSEEEEEDEEEEDIDKVQLVEADGLEQDVG 68

  Fly  1221 GTAAGQPANKKIRRPMNAFMIFSKKHRKMVHKKHPNQDNRTVSKILGEWWYALKPEQKAQYHELA 1285
            .|...:...::.|||||||::|.|:||.:|.::||..|||..:|||.:||..|.|::|.:|.::|
  Rat    69 ETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMA 133

  Fly  1286 SSVKDAHFKLHPEWKWCSKDRR--KSSTSTATPGGKASGAAGTGDAKQRLVSVDGSDSLEHDMCP 1348
            ...|||..|.:|.::||....:  ||.|.|..|             :::|.:.. |||       
  Rat   134 KEYKDAFMKANPGYRWCPTTNKPVKSPTPTVNP-------------RKKLWAFP-SDS------- 177

  Fly  1349 STPGGSGSCGGQGISSDLQGDIIPLTIDNYNSTCDEAPTTISMKGNGNGKLMKNELP------SD 1407
                          |.||                   ||.        .|....|:|      :|
  Rat   178 --------------SRDL-------------------PTA--------KKAKTEEVPQLNFGMAD 201

  Fly  1408 EDE----QMLVVEEEQQQQTVKKIDLHCRERVNDSDMDDTPFDYRKQQPEANQRS-----AEEHS 1463
            ..:    .||::..|....|.:.....||..:::|             ||..|:|     ||..|
  Rat   202 PTQMGGLSMLLLAGEHALGTPEASSGTCRPDISES-------------PELRQKSPLFQFAEISS 253

  Fly  1464 TSGANGQAINAPPLSGGEREITLKPKAIKAHPVLESNMLPYTQMSIYTQYTSPKNPIGVT-PFQP 1527
            .:                           :||...|.....:.:..:.:.:|..:.:|.| |.:.
  Rat   254 RT---------------------------SHPDAPSKQCQASALFQFAEISSSTSQLGGTEPVKR 291

  Fly  1528 TGGA----FKSMPISPKG--------SGGKPEDAGSLQAHIK---QEDIKQEP--PSPYKLNNGS 1575
            .|.:    ...|.::.:|        :..|..|.|.::...|   :.|:|.|.  .:.::.....
  Rat   292 CGNSALFQLAEMCLASEGVKMEGTELTKSKDSDGGRIEEMEKGKEERDMKMEKTIETAFQAEAEF 356

  Fly  1576 GSASGGGVVSAPPPNSGSVGAIFNFNVPTATALSQKQFHYPMHHPHRSPTDLRAAHQACVPSSPA 1640
            |.::.|.:                                      |.|.|||...|.       
  Rat   357 GKSAKGNI--------------------------------------REPKDLRDIEQL------- 376

  Fly  1641 GMGLGHAANIATPPASAPAQIMGGGPASQKMFFAMTHPYTLLQRSHQPGTPSLEHLQLDAFAPGG 1705
                 .:.|:.......|..........||.             ||              |....
  Rat   377 -----QSDNVMAIKVEDPKDSRKESDDDQKY-------------SH--------------FPDFS 409

  Fly  1706 YTLRNHNGLSSLPPPVSAQPTMLLHGYPPSHGV----EPPARSPSYK--------------SMPS 1752
            |:..:...:|.:|    ::...:.|    .||:    :|.|.:...|              :..|
  Rat   410 YSASSKIIISDVP----SRKDHMCH----PHGIMIIEDPTALNKPEKIKKKKKKNKLDRHGNDRS 466

  Fly  1753 TPKSATYLMSAPPERGMDGGMSGCASAAASGGDESDIDADGQQFILAPTPA---------QLGRA 1808
            |||.|                  |....:|   ||||::     ::....|         :||..
  Rat   467 TPKKA------------------CKKRQSS---ESDIES-----VMYTIEAVAKGDWGADRLGET 505

  Fly  1809 PLQRRKNLSQSKSESNVSFGANLGA--------SNGQHISRKLHSPTMMESSSPIIGHVNSSNLS 1865
            |.::.:..|..|       |..|.|        |..:.:|::..|....||..|     :..|:|
  Rat   506 PRKKVRTSSSGK-------GGILDAKPPKKKVKSKEKKVSKEKCSDITKESRPP-----DFLNIS 558

  Fly  1866 SALPTPTSSTTTPNSDEQLPLTPT----------------------TSSSNSNLNQQQPKSPM-- 1906
            ::...|..   .|.|.:..|||||                      |.:..|..:::..|..:  
  Rat   559 ASKSVPGE---VPESMKAEPLTPTEDALPPSLPGQAKPEDSDCHRKTETCGSRKSERSCKGALYK 620

  Fly  1907 -------------------------------------------KGAPGSTAAALKKKNDEMNNSV 1928
                                                       .|..||.....|.:.|....|.
  Rat   621 TLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWSEESWTFNQSGTSGSKKFKKKLREDSFLGSA 685

  Fly  1929 LKQVDFEKKYKALPQFQP----EDCQSPSAIAVPSSPRVYGT-------------NYRKKNTAPP 1976
            ....:||||:.:|||:.|    ..|     :::|...:..|.             ..:|||....
  Rat   686 KLDEEFEKKFNSLPQYSPITFDRKC-----VSIPRKKKKTGNMSSESTKASKGPFQSQKKNLFHK 745

  Fly  1977 PVQKL--MCEDDSIDEPASAPPTTTQRFFGPDFN--NELKDERLAELESSDQTGRSPRTPKTPLQ 2037
            .|.|.  ..|..::.|..|....:.::||....:  ..:..|.....|.:.:...:...|.||..
  Rat   746 IVSKYKHKKEKPNVPEKGSGDKWSHKQFFLDAIHPTEAIFSEDKNTTEPAYKVKNALSIPNTPEP 810

  Fly  2038 SARSD---ASEKGHRKVLETRRSLVLQLFAEHGNFPTAQATMAFQSKHSDVFPRKQDLQLKIREV 2099
            :|..:   .|:|  ||..:|:.:.:::  ...|....|..|:       |..|::| ||.::.:|
  Rat   811 TAMQEPLVGSQK--RKARKTKITHLVR--TADGRVSPAGGTL-------DDKPKEQ-LQRRLPKV 863

  Fly  2100 RQKLLGQASCT------PHSAGPNTPSDS 2122
            .:...|. :|:      |.|:.|..|:.|
  Rat   864 PETFCGD-NCSHTTVEEPRSSTPEMPAVS 891

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cicNP_001262755.1 DUF4819 349..431 CDD:292708
SOX-TCF_HMG-box 1231..1302 CDD:238684 32/70 (46%)
BbxXP_008766856.1 SOX-TCF_HMG-box 79..150 CDD:238684 32/70 (46%)
DUF2028 191..>323 CDD:312980 28/171 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2746
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D10281at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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