DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment esn and LIMD1

DIOPT Version :9

Sequence 1:NP_001260760.1 Gene:esn / 53557 FlyBaseID:FBgn0263934 Length:1134 Species:Drosophila melanogaster
Sequence 2:NP_055055.1 Gene:LIMD1 / 8994 HGNCID:6612 Length:676 Species:Homo sapiens


Alignment Length:506 Identity:115/506 - (22%)
Similarity:169/506 - (33%) Gaps:114/506 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   342 PAPRSSGNMQQAPQQQQHPHPPSSSYYTQTESELLQIEAGG-------------TGLTFASHSQR 393
            |.|:..|:           ||.:....:.:.|...:...||             |||...:.|||
Human   217 PLPKPCGD-----------HPLNHRQLSLSSSRSSEGSLGGQNSGIGGRSSEKPTGLWSTASSQR 270

  Fly   394 -----PESAISQVA--------STAHLDVPSAASSGSGGSAVSGGSGGAPESAGRF----VSPLQ 441
                 |...:...|        .|..:..|.|.|....|......||...|.:|..    |.|..
Human   271 VSPGLPSPNLENGAPAVGPVQPRTPSVSAPLALSCPRQGGLPRSNSGLGGEVSGVMSKPNVDPQP 335

  Fly   442 RRHCQPPSHLPLNSVASPLRTASYKSAAAVAGHGFHHSHHQQLDFQRNSQSDDDSGCALEEYTWV 506
            .....|.|:|..::.:|...........||.|.|           .:...:|..:|..|...:.|
Human   336 WFQDGPKSYLSSSAPSSSPAGLDGSQQGAVPGLG-----------PKPGCTDLGTGPKLSPTSLV 389

  Fly   507 PPGLRPDQVRLYFSQLPD---DKVPY-VNSPGEKYRVKQLLHQLPPQDNEVRY-CHSLSDEERKE 566
            .|         ..|.||:   .:.|. .:|.|....|  ||..  |....||. |..|  ....|
Human   390 HP---------VMSTLPELSCKEGPLGWSSDGSLGSV--LLDS--PSSPRVRLPCQPL--VPGPE 439

  Fly   567 LRIFSAQRKREALGRGAVRLLSDERP-------CKGCEEPLSGGDIVVFAQRLGAQLC------W 618
            ||..:|:.|.|||.:...|.: |..|       |..|.:.:.|          ..|.|      :
Human   440 LRPSAAELKLEALTQRLEREM-DAHPKADYFGACVKCSKGVFG----------AGQACQAMGNLY 493

  Fly   619 HPGCFVCSVCKELLVDLIYFQRDGNLYCGRHHA----ETQKPRCSACDEIIFSDECTEAEGRTWH 679
            |..||.|:.|...|....::..:|.::|.....    :....||..|..:|. |...:|.|:::|
Human   494 HDTCFTCAACSRKLRGKAFYFVNGKVFCEEDFLYSGFQQSADRCFLCGHLIM-DMILQALGKSYH 557

  Fly   680 MKHFACQECEHQLGGQRY-IMREGKPYCLACFDTMFAEYCDYCGEVIGVDQGQ------MSHDGQ 737
            ...|.|..|...|.|..: :..|.|.||:..:..:.|..|..||..|...:|.      :|.| :
Human   558 PGCFRCVICNECLDGVPFTVDSENKIYCVRDYHKVLAPKCAACGLPILPPEGSDETIRVVSMD-R 621

  Fly   738 HWHATDQCFSCCTCRCSLL---GRPFLPRRGTIYCSIACSKGEPPTPSDTS 785
            .:|.  :|:.|..|...|.   |....|....::|.....|.....||.|:
Human   622 DYHV--ECYHCEDCGLELNDEDGHRCYPLEDHLFCHSCHVKRLEKRPSSTA 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
esnNP_001260760.1 PET_Prickle 492..588 CDD:193602 28/100 (28%)
LIM1_Prickle 593..651 CDD:188799 13/63 (21%)
LIM2_Prickle 656..711 CDD:188802 17/55 (31%)
LIM3_Prickle 716..774 CDD:188804 15/66 (23%)
LIMD1NP_055055.1 Mediates nuclear export 54..134
Atrophin-1 <69..443 CDD:331285 57/262 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 104..163
Interaction with EGLN1/PHD2 186..260 8/53 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 189..389 38/193 (20%)
Interaction with RB1. /evidence=ECO:0000269|PubMed:15542589 404..442 13/43 (30%)
Necessary for nuclear localization 472..676 50/213 (23%)
LIM1_Ajuba_like 472..525 CDD:188738 13/62 (21%)
LIM2_Ajuba_like 537..589 CDD:188741 16/52 (31%)
LIM3_Ajuba_like 597..658 CDD:188822 15/63 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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