DRSC/TRiP Functional Genomics Resources

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Protein Alignment esn and lmcd1

DIOPT Version :9

Sequence 1:NP_001260760.1 Gene:esn / 53557 FlyBaseID:FBgn0263934 Length:1134 Species:Drosophila melanogaster
Sequence 2:XP_012815919.1 Gene:lmcd1 / 100124907 XenbaseID:XB-GENE-966902 Length:352 Species:Xenopus tropicalis


Alignment Length:350 Identity:106/350 - (30%)
Similarity:155/350 - (44%) Gaps:45/350 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   396 SAISQVASTAHLDVPSAASSGSGGSAVSGG-SGGAPESAGRFVSPLQ--RRHCQPPSHLPLNSVA 457
            |.|.:::...|     .|..|:......|. ||..|.|..:.....|  |.....||.|..:...
 Frog     5 SGIQKMSVGQH-----PAGKGAPCKKCKGSCSGFQPHSWRKQCGSCQCPREEHSLPSDLEEDCRI 64

  Fly   458 SPLRTASYKSAAAVAGHGFHHSHHQQLDFQRNSQ-------SDDDSGCALEEYTWVPPGLRPDQV 515
            ..|.:.|:.|.......|...|.    .::||..       |..|.......|.|.||||.....
 Frog    65 GQLLSDSHYSGLTARMKGVEGSR----VYKRNRMIITNPITSGKDPTFLTVTYEWAPPGLNQKLA 125

  Fly   516 RLYFSQLPDDKVPYVNSPGEKYRVKQLLHQLPPQDNEVRYCHSLSDEERKELRIFSAQRKREALG 580
            ..|...:|.:..|...:.|..||..|||.||||.|:....|..||:.||..:..|..:.|.:|||
 Frog   126 MQYMELIPKNMQPVAGTEGAHYRRVQLLRQLPPYDHNPDLCQGLSERERTAMEDFVKRYKEQALG 190

  Fly   581 RGAVRLLSDERP--------------------------CKGCEEPLSGGDIVVFAQRLGAQLCWH 619
            ...|.|....:.                          |:.|::|||.....|:|:|.|....||
 Frog   191 VAEVALPCSAKQQTEKNGSKSKETNGTAKEAFEKTEYFCEMCQQPLSRDAPAVYAERAGFDKQWH 255

  Fly   620 PGCFVCSVCKELLVDLIYFQRDGNLYCGRHHAETQKPRCSACDEIIFSDECTEAEGRTWHMKHFA 684
            |.||:|..|:|.||:||||.|:.:|:||||:.|:::|||:.||::|||::..:.:...||..||:
 Frog   256 PACFMCCQCREPLVNLIYFWRNNSLWCGRHYCESERPRCAGCDQMIFSEDYEQVDSGFWHRHHFS 320

  Fly   685 CQECEHQLGGQRYIMREGKPYCLAC 709
            |.:|:..|.|:.|::.:.:|.|..|
 Frog   321 CTDCDQTLSGKPYVLDKAQPLCDLC 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
esnNP_001260760.1 PET_Prickle 492..588 CDD:193602 34/95 (36%)
LIM1_Prickle 593..651 CDD:188799 29/57 (51%)
LIM2_Prickle 656..711 CDD:188802 19/53 (36%)
LIM3_Prickle 716..774 CDD:188804
lmcd1XP_012815919.1 PET_testin 111..198 CDD:193604 32/86 (37%)
LIM1_Testin_like 229..286 CDD:188726 28/56 (50%)
LIM 292..345 CDD:351770 19/52 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D422310at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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