DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dbo and AT1G22040

DIOPT Version :9

Sequence 1:NP_524989.2 Gene:dbo / 53556 FlyBaseID:FBgn0040230 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_173623.1 Gene:AT1G22040 / 838809 AraportID:AT1G22040 Length:475 Species:Arabidopsis thaliana


Alignment Length:294 Identity:80/294 - (27%)
Similarity:120/294 - (40%) Gaps:79/294 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   343 DPQTNDWKMVAPM-------SKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV 400
            ||.:..|:.:.||       ..|:...|:..:....:.||. ..:|:|.   |.|      |.:.
plant   114 DPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGA-IVRSFLG---RRD------SSEQ 168

  Fly   401 APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVAPMTTRRLGVAVAVLGGF 465
            .|...|    .:..:||.||.:||....:.::.|.|:||..|.||:|:.|...|......||...
plant   169 MPFCGC----AIGAVDGGLYVIGGLSRSKTVSCVWRFDPILNSWSEVSSMLASRAYSKTGVLNKK 229

  Fly   466 LYAIGGSD----GQCPLNTVERYDPRHNKWVAVSPMSTRRKHL---------------GCAVFNN 511
            ||.:||.|    |..||.:.|.|||..:.|..|..|...:..:               |...:|.
plant   230 LYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSMPFSKAQVLPNAFLADLLKPIATGMTCYNG 294

  Fly   512 ------------YIYAVGGRDDCMELSSAERYNPLTNTWSPIVAMTS--------RRSGVGLA-V 555
                        :...|||          |.|:|.||.|   |.|.|        |::|..|: |
plant   295 RLCVPQSLYSWPFFVDVGG----------EVYDPETNLW---VEMPSGMGEGWPARQAGTKLSVV 346

  Fly   556 VNGQLYAVGGFDGSAYLKT--IEVYDPETNQWRL 587
            |:|:|||   ||.|:.::.  |:|||.:.:.|::
plant   347 VDGELYA---FDPSSSMENGKIKVYDQKEDTWKV 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dboNP_524989.2 BTB_POZ_KLHL20_KLEIP 49..176 CDD:349558
PHA03098 69..587 CDD:222983 80/292 (27%)
KELCH repeat 359..403 CDD:276965 8/43 (19%)
KELCH repeat 407..451 CDD:276965 14/43 (33%)
KELCH repeat 454..497 CDD:276965 17/46 (37%)
KELCH repeat 501..545 CDD:276965 12/70 (17%)
KELCH repeat 548..593 CDD:276965 16/43 (37%)
AT1G22040NP_173623.1 F-box 44..86 CDD:395521
Kelch_1 170..214 CDD:396078 16/47 (34%)
KELCH repeat 172..214 CDD:276965 15/45 (33%)
PHA03098 <173..385 CDD:222983 65/225 (29%)
KELCH repeat 218..266 CDD:276965 17/47 (36%)
KELCH repeat 269..328 CDD:276965 13/71 (18%)
KELCH repeat 336..378 CDD:276965 17/45 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I2576
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

Return to query results.
Submit another query.