DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dbo and AT5G38670

DIOPT Version :10

Sequence 1:NP_524989.2 Gene:dbo / 53556 FlyBaseID:FBgn0040230 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_198683.1 Gene:AT5G38670 / 833857 AraportID:AT5G38670 Length:291 Species:Arabidopsis thaliana


Alignment Length:386 Identity:69/386 - (17%)
Similarity:107/386 - (27%) Gaps:189/386 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 LQHVRLPLLSPKFLVGTVGSDLLVRSDE--ACRDLVDEAKN--YLLLPQERPLMQGPRTRPRKPT 318
            |.:..|.|:|..|       ..|:.|.|  ..|.|:|..::  |:|........:|||.|.:..:
plant    26 LYYPALSLVSKSF-------RSLIASPELYKTRSLLDRTESCLYILYCTSNTWHEGPRLRVKLMS 83

  Fly   319 RRGEVL---FAVGGWC-SGDAIASVERFDPQTNDW-KMVAPMSKRRCGVGVAVLNDLLYAVGGHD 378
            ....||   ..|.|.| .||:: :.:.||..|..| .:..|.|:.:        :|..|.:...|
plant    84 CTACVLDEKIYVSGRCKDGDSM-TFQVFDTNTQTWDPLSVPCSETK--------HDFHYKIVRFD 139

  Fly   379 GQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 443
            |:.:|.|.:                                             .|:.|:.||.:
plant   140 GKLHLVSYK---------------------------------------------GVDAYNSKEGR 159

  Fly   444 WSKVAPMTTRRLGVAVAVLGGFLYAIGGSDGQCPLNTVERYDPRHNKWVAVSPMSTRRKHLGCAV 508
            |..|.|                              ::|     |||                  
plant   160 WDLVTP------------------------------SIE-----HNK------------------ 171

  Fly   509 FNNYIYAVGGRDDCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLYAVGGFDGSAYLK 573
               |:|      ||        |..:.|.|..||.                    |....|.:. 
plant   172 ---YLY------DC--------YRNIGNVWYTIVK--------------------GDISTSVWW- 198

  Fly   574 TIEVYDPETNQWR------------LCGCMNYRRLGGGVGVMRAPQTENYM--------WC 614
                |..|..:||            :..|:.....||.:.|:    .::|:        ||
plant   199 ----YHSEEREWRDLKGMVGLPKFPIDACLRMVDYGGKMAVL----WDDYLPGRRKKMIWC 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dboNP_524989.2 BTB_POZ_KLHL20_KLEIP 49..176 CDD:349558
PHA03098 69..587 CDD:222983 62/349 (18%)
KELCH repeat 359..403 CDD:276965 6/43 (14%)
KELCH repeat 407..451 CDD:276965 7/43 (16%)
KELCH repeat 454..497 CDD:276965 4/42 (10%)
KELCH repeat 501..545 CDD:276965 9/43 (21%)
KELCH repeat 548..593 CDD:276965 7/56 (13%)
AT5G38670NP_198683.1 F-box_AtAFR-like 9..51 CDD:438923 8/31 (26%)
NanM <68..254 CDD:442289 56/337 (17%)
KELCH repeat 81..121 CDD:276965 11/40 (28%)
KELCH repeat 124..165 CDD:276965 13/93 (14%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.