DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dbo and AT5G38670

DIOPT Version :9

Sequence 1:NP_524989.2 Gene:dbo / 53556 FlyBaseID:FBgn0040230 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_198683.1 Gene:AT5G38670 / 833857 AraportID:AT5G38670 Length:291 Species:Arabidopsis thaliana


Alignment Length:386 Identity:69/386 - (17%)
Similarity:107/386 - (27%) Gaps:189/386 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 LQHVRLPLLSPKFLVGTVGSDLLVRSDE--ACRDLVDEAKN--YLLLPQERPLMQGPRTRPRKPT 318
            |.:..|.|:|..|       ..|:.|.|  ..|.|:|..::  |:|........:|||.|.:..:
plant    26 LYYPALSLVSKSF-------RSLIASPELYKTRSLLDRTESCLYILYCTSNTWHEGPRLRVKLMS 83

  Fly   319 RRGEVL---FAVGGWC-SGDAIASVERFDPQTNDW-KMVAPMSKRRCGVGVAVLNDLLYAVGGHD 378
            ....||   ..|.|.| .||:: :.:.||..|..| .:..|.|:.:        :|..|.:...|
plant    84 CTACVLDEKIYVSGRCKDGDSM-TFQVFDTNTQTWDPLSVPCSETK--------HDFHYKIVRFD 139

  Fly   379 GQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 443
            |:.:|.|.:                                             .|:.|:.||.:
plant   140 GKLHLVSYK---------------------------------------------GVDAYNSKEGR 159

  Fly   444 WSKVAPMTTRRLGVAVAVLGGFLYAIGGSDGQCPLNTVERYDPRHNKWVAVSPMSTRRKHLGCAV 508
            |..|.|                              ::|     |||                  
plant   160 WDLVTP------------------------------SIE-----HNK------------------ 171

  Fly   509 FNNYIYAVGGRDDCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLYAVGGFDGSAYLK 573
               |:|      ||        |..:.|.|..||.                    |....|.:. 
plant   172 ---YLY------DC--------YRNIGNVWYTIVK--------------------GDISTSVWW- 198

  Fly   574 TIEVYDPETNQWR------------LCGCMNYRRLGGGVGVMRAPQTENYM--------WC 614
                |..|..:||            :..|:.....||.:.|:    .::|:        ||
plant   199 ----YHSEEREWRDLKGMVGLPKFPIDACLRMVDYGGKMAVL----WDDYLPGRRKKMIWC 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dboNP_524989.2 BTB_POZ_KLHL20_KLEIP 49..176 CDD:349558
PHA03098 69..587 CDD:222983 62/349 (18%)
KELCH repeat 359..403 CDD:276965 6/43 (14%)
KELCH repeat 407..451 CDD:276965 7/43 (16%)
KELCH repeat 454..497 CDD:276965 4/42 (10%)
KELCH repeat 501..545 CDD:276965 9/43 (21%)
KELCH repeat 548..593 CDD:276965 7/56 (13%)
AT5G38670NP_198683.1 F-box 10..53 CDD:279040 9/33 (27%)
Kelch_2 81..123 CDD:284956 11/42 (26%)
KELCH repeat 81..121 CDD:276965 11/40 (28%)
KELCH repeat 124..165 CDD:276965 13/93 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.