DRSC/TRiP Functional Genomics Resources

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Protein Alignment dbo and AT4G39580

DIOPT Version :9

Sequence 1:NP_524989.2 Gene:dbo / 53556 FlyBaseID:FBgn0040230 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_195668.1 Gene:AT4G39580 / 830112 AraportID:AT4G39580 Length:375 Species:Arabidopsis thaliana


Alignment Length:292 Identity:67/292 - (22%)
Similarity:105/292 - (35%) Gaps:87/292 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 RDLVDEAKNYLLLPQERPLMQGPRTRPRKPTRRGEV------LFAVGGWCSGDAIASVERFDPQT 346
            |.|.:.:..:||:|        ..:|...|.....|      ::|:||..:....:||...|.|.
plant    99 RKLTNFSGGHLLVP--------ILSRYAPPAHWSSVVAVDYNIYAIGGPINDAPSSSVSVLDCQC 155

  Fly   347 NDWKMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAP-TTSCR--- 407
            ..|:....|...|......||:..:|..||.:..:.|:.||.:||:|..|....:| |..|.   
plant   156 EKWREAPSMRVARNYPTATVLDGKIYVAGGCEDCTSLDCIEVFDPKTQTWDSVASPGTERCERLV 220

  Fly   408 -TSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVA-PMTTRRLGVAVAVLGGFLYAIG 470
             .|||:   :|..:..||      ..|| .|||||.:|..|. .|...|..|:..|:...|:   
plant   221 YKSVGI---EGKYHLFGG------AGHV-AYDPKEGRWDSVGMDMEMGRTWVSYCVINNILF--- 272

  Fly   471 GSDGQCPLNTVERYDPRHNKW----------------------------------VAV-----SP 496
                        .|:.|..||                                  :||     .|
plant   273 ------------YYNDREFKWYDYKGRFWRKLMGLERLIKFLCYSRVNLAAYGEKMAVLWDTFVP 325

  Fly   497 MSTRRKHLGCA---VFNNYIYAVGGRDDCMEL 525
            .|::.|.:.||   :..:.||.:.|:.:..::
plant   326 SSSKNKMIWCAEITIERHDIYEICGKTEWFDV 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dboNP_524989.2 BTB_POZ_KLHL20_KLEIP 49..176 CDD:349558
PHA03098 69..587 CDD:222983 67/292 (23%)
KELCH repeat 359..403 CDD:276965 14/44 (32%)
KELCH repeat 407..451 CDD:276965 15/48 (31%)
KELCH repeat 454..497 CDD:276965 10/81 (12%)
KELCH repeat 501..545 CDD:276965 6/28 (21%)
KELCH repeat 548..593 CDD:276965
AT4G39580NP_195668.1 F-box 26..65 CDD:395521
PHA03098 <125..300 CDD:222983 50/199 (25%)
KELCH repeat 125..164 CDD:276965 9/38 (24%)
KELCH repeat 168..212 CDD:276965 13/43 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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