DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dbo and AT4G39560

DIOPT Version :10

Sequence 1:NP_524989.2 Gene:dbo / 53556 FlyBaseID:FBgn0040230 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_195666.2 Gene:AT4G39560 / 830110 AraportID:AT4G39560 Length:266 Species:Arabidopsis thaliana


Alignment Length:315 Identity:70/315 - (22%)
Similarity:105/315 - (33%) Gaps:107/315 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 SEEFLLLPVGQLVDIICSDELNVRSEEQVFNAVMSWLKYNVAERRQHLAQVLQHVRLPLLSPKFL 271
            |.:.|.|||..|:.|:               |.:|.|.|.:      |:.|.:..|..:.||:..
plant    24 STQILSLPVDLLISIL---------------ARVSRLDYPI------LSLVSKSFRSLIASPELY 67

  Fly   272 VGTVGSDLLVRSDEACRDLVDEAKNYLLLPQERPLMQGPR--TRPRKPTRRGEVLFAVGGWCSGD 334
                          ..|.|:...::.|.|....|....||  |..|||...|.|:.|:.      
plant    68 --------------ETRSLLGRTESCLYLCLGIPSDFNPRWFTLCRKPKPSGHVMAAIS------ 112

  Fly   335 AIASVERFDPQTNDWKMVAPMSKR-RCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSC 398
                              .|.|:. .|...|||.:| :|.:||.....:.:|:...|.:.:.|. 
plant   113 ------------------IPNSRPVHCSGLVAVGSD-IYNIGGSIINEHSSSVSILDCRYHTWR- 157

  Fly   399 DVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKW----SKVAPMTTRRL---- 455
            |.......|.|....|:||.:|..||.......|.:|.:|.|...|    :.:|....||:    
plant   158 DAPNMLVERNSHAANVIDGKIYVAGGSRDSNSSNWMEVFDIKTQTWEPVLNPIADGCDRRIRKSA 222

  Fly   456 ------------GVAVAVLGGFLYAIGGSDGQCPLNTVERYDPRHNKWVAVSPMS 498
                        ||.||                       |:||.:||.|:..::
plant   223 VIEEAICLFGYKGVGVA-----------------------YNPRIDKWEAIGEVN 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dboNP_524989.2 BTB_POZ_KLHL20_KLEIP 49..176 CDD:349558
PHA03098 69..587 CDD:222983 70/315 (22%)
KELCH repeat 359..403 CDD:276965 12/43 (28%)
KELCH repeat 407..451 CDD:276965 14/47 (30%)
KELCH repeat 454..497 CDD:276965 11/58 (19%)
KELCH repeat 501..545 CDD:276965
KELCH repeat 548..593 CDD:276965
AT4G39560NP_195666.2 F-box_AtAFR-like 27..70 CDD:438923 15/77 (19%)
NanM <118..252 CDD:442289 38/158 (24%)
KELCH repeat 123..162 CDD:276965 11/40 (28%)
KELCH repeat 166..214 CDD:276965 14/47 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.