DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dbo and AT4G19330

DIOPT Version :9

Sequence 1:NP_524989.2 Gene:dbo / 53556 FlyBaseID:FBgn0040230 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_001319995.1 Gene:AT4G19330 / 28720147 AraportID:AT4G19330 Length:383 Species:Arabidopsis thaliana


Alignment Length:282 Identity:59/282 - (20%)
Similarity:86/282 - (30%) Gaps:95/282 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   386 IERYDPQ-TNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVAP 449
            |:.||.| ...|:.|                            ::|..|          |  :.|
plant   104 IKPYDHQPLTHWTID----------------------------IKCTGH----------W--LLP 128

  Fly   450 MT---TRRLGVAVAVLGGFLYAIGGSDGQCPLNTVERYDPRHNKWVAVSPMSTRRKHLGCAVFNN 511
            |.   :|.|.:....:|...|.|||.: ..|...|..||....|......|...||:....|.:.
plant   129 MPSPYSRCLQIVHETVGSETYEIGGQN-MTPSTDVWVYDKLIGKQRKAPSMMVARKNAFTCVLDG 192

  Fly   512 YIYAVGGRDDCMELSSAERYNPLTNTWS--PIVAMTSRRSGV-GLAVVNGQLYAVGGFDGSAYL- 572
            .:|.:||.:.......||.::|.|.||.  |...:..|.|.| .:....|::|.........|| 
plant   193 KLYVMGGCEADESTHWAEVFDPKTQTWEALPDPGVELRYSSVKNIQTKQGKVYVRSNKKNFVYLI 257

  Fly   573 --------------KTIEV--------------YDPETNQWRL----CGCMNYRRLGGGVG---- 601
                          .|.|:              ||.:..:|||    .|...|.:....:|    
plant   258 KECMWEVAEENLGESTCEIENVCYCYSNKRYWWYDAKCEEWRLVKGVSGLYEYYKTDSEIGNYGG 322

  Fly   602 ---------VMRAPQTENYMWC 614
                     |.|...|:. :||
plant   323 KLVVFWDRAVSRLTATKE-IWC 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dboNP_524989.2 BTB_POZ_KLHL20_KLEIP 49..176 CDD:349558
PHA03098 69..587 CDD:222983 49/236 (21%)
KELCH repeat 359..403 CDD:276965 6/17 (35%)
KELCH repeat 407..451 CDD:276965 4/43 (9%)
KELCH repeat 454..497 CDD:276965 11/42 (26%)
KELCH repeat 501..545 CDD:276965 13/45 (29%)
KELCH repeat 548..593 CDD:276965 14/78 (18%)
AT4G19330NP_001319995.1 F-box 34..76 CDD:306992
BTB <122..241 CDD:333434 33/131 (25%)
NanM 180..>326 CDD:330881 30/145 (21%)
Kelch_1 181..226 CDD:279660 13/44 (30%)
KELCH repeat 182..224 CDD:276965 12/41 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.