DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3021 and Trmu

DIOPT Version :9

Sequence 1:NP_652639.1 Gene:CG3021 / 53546 FlyBaseID:FBgn0040337 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_082339.1 Gene:Trmu / 72026 MGIID:1919276 Length:417 Species:Mus musculus


Alignment Length:404 Identity:169/404 - (41%)
Similarity:244/404 - (60%) Gaps:19/404 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 IRNVVVGVSGGVDSAVSAHLLAEQGFKVLGVFMRNWDEADEVGRCSGEADLKDAEWACRQLGVEL 66
            :|:||..:||||||||:|.||..:|::|.||||:|||..||.|.|:.:.|.:||...|:.|.:..
Mouse     4 LRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEQGVCAADKDCEDAYKVCQILDIPF 68

  Fly    67 RQVNYVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATGHYARNSL 131
            .||:||:|||..|||.||::|:.|.||||||.||:||||..|:.:|::|||.||||||||||.||
Mouse    69 HQVSYVKEYWNDVFSDFLNEYEKGRTPNPDINCNKHIKFSCFYHYAVDNLGADAVATGHYARTSL 133

  Fly   132 ---------------GNYLEGIASNNDARLLIPADTFKDQTFFLAGISRKALQRTMFPLGDFQKS 181
                           |.:.......|..:||..||:||||||||:.:|:.||:||:||||:..|.
Mouse   134 EDEEVFEQKHTKKPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGELTKD 198

  Fly   182 QVKDLAKKIGFQRLAKKKESTGICFVGKRNFKDFIQEYITSKRGPFLDIDSGAVVGHHEGIHQWT 246
            .||.:|.:.....:.:|:||.||||:||||.:.|:.:|:..:.|.|:.|:...|:|.|:|...:|
Mouse   199 FVKKIAAENSLHHVLQKRESMGICFIGKRNLEHFLLQYLQPRPGKFVSIEDNTVLGTHKGWFLYT 263

  Fly   247 VGQRCRLSSFLQPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKSQQILSDTGSLR 311
            :|||.::|...:|::|..|:.....:.||...:||||....:..:..:|:..:....|.....:.
Mouse   264 LGQRAKISGLREPWYVVEKDGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMME 328

  Fly   312 CRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYDDTACLGSARIL----SANPL 372
            |.|||:|...||.|.|:::...|..|.....:|.:..||:||||....||||.:||    ||..|
Mouse   329 CHFRFRHQMALVPCVLTLNQDGTVWVTAVKAVRGLALGQFAVFYKGEECLGSGKILRLGPSAYTL 393

  Fly   373 KKKNAQTQQAQAAN 386
            :|...:|:.|..|:
Mouse   394 QKGKNRTRVAPEAS 407

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG3021NP_652639.1 tRNA_Me_trans 14..366 CDD:281101 153/366 (42%)
tRNA_Me_trans 14..366 CDD:238956 153/366 (42%)
TrmuNP_082339.1 tRNA_Me_trans 5..383 CDD:281101 160/377 (42%)
tRNA_Me_trans 6..383 CDD:238956 159/376 (42%)
Interaction with target base in tRNA. /evidence=ECO:0000250 96..98 1/1 (100%)
Interaction with tRNA. /evidence=ECO:0000250 171..173 1/1 (100%)