DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lectin-24A and Clec7a

DIOPT Version :9

Sequence 1:NP_652637.1 Gene:lectin-24A / 53543 FlyBaseID:FBgn0040104 Length:282 Species:Drosophila melanogaster
Sequence 2:NP_001166857.1 Gene:Clec7a / 502902 RGDID:1565140 Length:235 Species:Rattus norvegicus


Alignment Length:117 Identity:28/117 - (23%)
Similarity:49/117 - (41%) Gaps:14/117 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 YIEEDVELNWLDAQAKCRRMGGHLASIKTKQEFDAIVEKLDDSK--SYFLGVNENTKTGDFV--- 230
            |:....|.:|..::..|.::|.||..|...:||:.|..:....:  |:::|::.|...|.:.   
  Rat   122 YLFSFSENSWYGSRRHCSQLGAHLLKIDNAKEFEFIESQTSSHRVNSFWIGLSRNQSEGPWFWED 186

  Fly   231 -SAASGKSCLYHEWGPGE--PHHNNDQERCVSILRKLMHVGNCTYEKRFICQ 279
             ||.:..|.......|.|  ||:      ||.|....::...|......||:
  Rat   187 GSAFTPNSFQVRNTAPQESLPHN------CVWIHGSEVYNQMCIASSFTICE 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lectin-24ANP_652637.1 CLECT 169..280 CDD:153057 28/117 (24%)
Clec7aNP_001166857.1 Ly49 34..>61 CDD:400616
CLECT_NK_receptors_like 110..233 CDD:153063 28/117 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.