DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lectin-28C and clec-50

DIOPT Version :9

Sequence 1:NP_001285727.1 Gene:lectin-28C / 53542 FlyBaseID:FBgn0040099 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_507830.1 Gene:clec-50 / 180299 WormBaseID:WBGene00012253 Length:321 Species:Caenorhabditis elegans


Alignment Length:101 Identity:30/101 - (29%)
Similarity:42/101 - (41%) Gaps:13/101 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 CQKMGGNLASIINEADFNAIVS-------QLSKDNTYMIGISDLAEKGVFISVSSGKRAPFLKWN 225
            |..:||:|||:.|..: ||::.       :.|..:.|.||.:||...|.:..........:..|.
 Worm    50 CNLLGGHLASVQNGQE-NALLQSNAANSFKRSNYSDYWIGANDLETSGTWKWTDPSVTFDYSNWQ 113

  Fly   226 PGEPLYEHVDQRCVSIHNG-GMWVA-SCTSDFKYIC 259
            .|||   .....|.....| |.|.| .|||...|:|
 Worm   114 LGEP---QSGSDCAIQDKGDGTWSAIGCTSYRPYVC 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lectin-28CNP_001285727.1 Mer2 <12..134 CDD:286200
CLECT 160..260 CDD:153057 30/101 (30%)
clec-50NP_507830.1 CLECT 26..146 CDD:214480 29/99 (29%)
CLECT 182..315 CDD:214480
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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