DRSC/TRiP Functional Genomics Resources

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Protein Alignment lectin-28C and mrc1a

DIOPT Version :9

Sequence 1:NP_001285727.1 Gene:lectin-28C / 53542 FlyBaseID:FBgn0040099 Length:265 Species:Drosophila melanogaster
Sequence 2:XP_002663014.2 Gene:mrc1a / 100286774 ZFINID:ZDB-GENE-090915-4 Length:1440 Species:Danio rerio


Alignment Length:108 Identity:38/108 - (35%)
Similarity:51/108 - (47%) Gaps:12/108 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 WTSALSACQKMGGNLASIINEADFNAIVSQ---LSKDNTYMIGISDLAEKGVFISVSSGKRAPFL 222
            |..||:||.:.|.|||||.|..:.:.|:||   |..|..: ||::|...:.:| ..|......|.
Zfish   382 WNDALAACHREGANLASIHNIEEHSFIISQSGYLPTDELW-IGLNDQKTQNLF-EWSDRTHVTFT 444

  Fly   223 KWNPGEPLYEHVDQR---CVSIH-NGGMWV-ASCTSDFKYICE 260
            .|..|||  .|...|   ||.|. ..|.|. .:|..:..|||:
Zfish   445 TWLVGEP--SHFINRLEDCVLIKGKDGKWADHACEMERGYICK 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lectin-28CNP_001285727.1 Mer2 <12..134 CDD:286200
CLECT 160..260 CDD:153057 37/106 (35%)
mrc1aXP_002663014.2 RICIN 31..>108 CDD:214672
RICIN 37..>108 CDD:238092
FN2 165..213 CDD:128373
CLECT 235..343 CDD:153057
CLECT 361..485 CDD:214480 37/106 (35%)
CLECT 503..625 CDD:214480
CLECT 656..771 CDD:153057
CLECT 794..914 CDD:214480
CLECT 944..1072 CDD:153057
CLECT 1087..1204 CDD:214480
CLECT 1221..1347 CDD:214480
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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