DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lectin-28C and si:ch211-125e6.11

DIOPT Version :9

Sequence 1:NP_001285727.1 Gene:lectin-28C / 53542 FlyBaseID:FBgn0040099 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_001124136.1 Gene:si:ch211-125e6.11 / 100170830 ZFINID:ZDB-GENE-070912-35 Length:146 Species:Danio rerio


Alignment Length:108 Identity:25/108 - (23%)
Similarity:51/108 - (47%) Gaps:13/108 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 NWTSALSACQKMGGNLASIINEADFNAIVSQLSKDNTYMIGISDLAEKGVFISVSSGKRAPFLKW 224
            :|.:|...||..||||||:.|..:.:.:::.:...:...||..|..::|.:: .:.|....:..|
Zfish    42 SWITAEKNCQGFGGNLASVHNRLENDFLMNMVPSSSRCWIGGHDGEQEGQWL-WTDGSMFDYNNW 105

  Fly   225 NPGEPLYEHVDQRCVSIHNGGMWVAS-------CTSDFKYICE 260
            ...||..:. .:.|:.|:    |.::       |::...::||
Zfish   106 CSDEPNNQR-SENCMEIN----WTSNHCWNDQGCSTSMGFMCE 143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lectin-28CNP_001285727.1 Mer2 <12..134 CDD:286200
CLECT 160..260 CDD:153057 23/106 (22%)
si:ch211-125e6.11NP_001124136.1 CLECT 32..144 CDD:153057 25/108 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100086
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.