DRSC/TRiP Functional Genomics Resources

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Protein Alignment lectin-46Ca and Clec4f

DIOPT Version :9

Sequence 1:NP_652633.1 Gene:lectin-46Ca / 53523 FlyBaseID:FBgn0040093 Length:328 Species:Drosophila melanogaster
Sequence 2:NP_446205.1 Gene:Clec4f / 114598 RGDID:621062 Length:550 Species:Rattus norvegicus


Alignment Length:130 Identity:33/130 - (25%)
Similarity:62/130 - (47%) Gaps:17/130 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 NGKCFYVGIKKINWFGAQNNCLRKGLNLADVSTMEDFKAVVHYVTSQVGFDDFWFGGNDLQSEGR 105
            |||.:|....|.:|..|:|.|:.:|.:||.|::.|: :|.:..:|:.|   |.|.|..|..:||.
  Rat   420 NGKFYYFSRDKKSWHEAENFCVSQGAHLASVTSQEE-QAFLVQITNAV---DHWIGLTDQGTEGN 480

  Fly   106 FKYISSGKLVRYMGDSNIVEPTQRSN-------LDDCLEIRIRPNVTVVLDVNCQEKKYFICEQN 163
            :::: .|....|:.........|..|       .:||:.::...|     |:.|.....::|:::
  Rat   481 WRWV-DGTPFDYVQSRRFWRKGQPDNWRHGNGEREDCVHLQRMWN-----DMACGTAYNWVCKKS 539

  Fly   164  163
              Rat   540  539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lectin-46CaNP_652633.1 CLECT 43..162 CDD:153057 31/125 (25%)
Clec4fNP_446205.1 SMC_prok_B <100..390 CDD:274008
CLECT_DC-SIGN_like 414..538 CDD:153060 33/127 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166344378
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22802
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.940

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