DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Myo28B1 and XIA

DIOPT Version :9

Sequence 1:NP_723294.1 Gene:Myo28B1 / 53515 FlyBaseID:FBgn0040299 Length:2122 Species:Drosophila melanogaster
Sequence 2:NP_171954.1 Gene:XIA / 839480 AraportID:AT1G04600 Length:1730 Species:Arabidopsis thaliana


Alignment Length:1802 Identity:499/1802 - (27%)
Similarity:783/1802 - (43%) Gaps:370/1802 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GEYVWVK-PQNTTSEFAVPFGARIVRTEKTQTLVCDDRNKQFWVPAGDVLKAMHITSQE------ 67
            |.:|||: |.:...:..|    ..|.:|:. |:.|..:..        |.|..::..::      
plant    10 GSHVWVEDPDDAWIDGEV----EEVNSEEI-TVNCSGKTV--------VAKLNNVYPKDPEFPEL 61

  Fly    68 DVEDMITLGDLQEYTILRNLQNRYAKQLIYTYTGSMLVAINPYQILP-IYTNREIQLYRNKSLAE 131
            .|:||..|..|.|..:|.||:.||....||||||::|:|:||::.|| :|.:..::.|:..:..|
plant    62 GVDDMTKLAYLHEPGVLLNLKCRYNANEIYTYTGNILIAVNPFKRLPHLYGSETMKQYKGTAFGE 126

  Fly   132 LPPHIFAISDNAFQRLQRLKENQCVVISGESGAGKTESTKLILQYLAAISGKHS----WIEQQII 192
            |.||.||::|:|::::.....:|.:::|||||||||||||:::||||.:.|:..    .:|||::
plant   127 LSPHPFAVADSAYRKMINEGVSQAILVSGESGAGKTESTKMLMQYLAYMGGRAESEGRSVEQQVL 191

  Fly   193 EANPIMEAFGNAKTVRNDNSSRFGKYIEIRFTPQGAIQGARIQQYLLEKSRIVFQSRDERNYHIF 257
            |:||::|||||||||||:|||||||::||:|..:|.|.||.|:.||||:||:...|..|||||.|
plant   192 ESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCF 256

  Fly   258 YCMLAGLSTAERERLKLQEQSPSQYHYLAQGGCFTLPGRGDAKDFADIRAAMKVLSFKPEEVWSI 322
            | ||......|.||.||.:  ||.:.||.|..|:.|.|..|:|::...|.||.|:....||...|
plant   257 Y-MLCAAPEQETERYKLGK--PSTFRYLNQSNCYALDGLDDSKEYLATRKAMDVVGINSEEQDGI 318

  Fly   323 LSLLAAILHLGNLRFTATEVANLATAEIDDTP-NLQRVAQLLGIPISALNAALTQRTIFVHGEHV 386
            ..::||||||||:.|...|.:..:..:.:.:. :|:..|:|......||..:|.:|.:....|.:
plant   319 FRVVAAILHLGNIEFAKGEESEASEPKDEKSRFHLKVAAELFMCDGKALEDSLCKRVMVTRDESI 383

  Fly   387 TTSLSKEAAIEGRDAFVKSLYDGIFVRIVRRINETINKQVDQPMNS---IGVLDIFGFENFDNNS 448
            |.||..::|..||||..|.:|..:|..:|.:||.:|.    |..||   ||||||:|||:|..||
plant   384 TKSLDPDSAALGRDALAKIVYSKLFDWLVTKINNSIG----QDPNSKHIIGVLDIYGFESFKTNS 444

  Fly   449 FEQLCINYANENLQQFFVGHIFKMEQDEYQNEHINWQHIEFQDNQQILDLIGMKPMNLMSLIDEE 513
            |||.|||..||.|||.|..|:|||||:||..|.|:|.:|||.|||.:||||..||..:::|:||.
plant   445 FEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEA 509

  Fly   514 SKFPKGTDQTLLEKLHVQHGNRSIYVKGKTTQTSLFGIRHYAGVVMYNPLGFLEKNRDSFSGDLR 578
            ..||:.|..|..:||:....|...:.|.|..||. |.|.||||.|.|....||:||:|...|:.:
plant   510 CMFPRSTHDTFAQKLYQTFKNHKRFGKPKLAQTD-FTICHYAGDVTYQTELFLDKNKDYVVGEHQ 573

  Fly   579 TLVQRSTNKYLVDIFPHEMPMDTAK--KQPTLCVKFRNSLDMLMRTLSQAHPYFIRCIKPNEYKE 641
            .|:..|...::..:|| .:|.:::|  |..::..:|:..|..|:.:||...|::|||:|||...:
plant   574 ALLSSSDCSFVSSLFP-PLPEESSKTSKFSSIGSQFKQQLQSLLESLSTTEPHYIRCVKPNNLLK 637

  Fly   642 PKNFDKELCVRQLRYSGMMETARIRRAGYPIRHAYRAFVERYRLLVPPV--GPLEQCD-CRKLAR 703
            |..|:....:.|||..|:||..||..||||.|..:..|:.|:|:|.|..  ...::.| |:||  
plant   638 PDIFENINILHQLRCGGVMEAIRISCAGYPTRKPFNEFLTRFRILAPETTKSSYDEVDACKKL-- 700

  Fly   704 QICEVALPADSDRQYGKTKLFLRDEDDASLELQRSQLMLKSIVTIQRGIRRVLFRRYMKRYREAI 768
             :.:|.|   ...|.||||:|||....|.::..|::::..|...|||.:.....|:.....:.|.
plant   701 -LAKVDL---KGFQIGKTKVFLRAGQMAEMDAHRAEVLGHSARIIQRNVLTYQSRKKFLLLQAAS 761

  Fly   769 ITVQRYWRGRLQRRKYQVMRQGFHRL--------------------GAC-------IAAQQLTTK 806
            ..:|...||::.|..::.||:....|                    .||       ..|.::..:
plant   762 TEIQALCRGQVARVWFETMRREAASLRIQKQARTYICQNAYKTLCSSACSIQTGMRAKAARIELQ 826

  Fly   807 FTMVRCRTIKLQALSRGYLVRKDFQK--------------KLLERRKQNQLKKEELLKLAKMKEA 857
            ....|..||.:|:..|..|..:.:.:              |:..|..:|       ||:|    |
plant   827 LRKKRRATIIIQSQIRRCLCHQRYVRTKKAAITTQCGWRVKVARRELRN-------LKMA----A 880

  Fly   858 EELLRLQQLKEQKEREQREQQEKRLQEEQRLKAEAAARNALAMAAVQ--------QKRRTKPVKQ 914
            :|...||..|.:.| .|.|:....|:.|::::.|.....:..:.|:|        |.|.|:..|.
plant   881 KETGALQDAKTKLE-NQVEELTSNLELEKQMRMEIEEAKSQEIEALQSVLTDIKLQLRDTQETKS 944

  Fly   915 EAPKAPTLQARNSLPPPPTTLIVAAPLPTRPASAVTRINTIPE---------------SPG---T 961
            :  :...||          :::....|..|.... |:...|.:               |.|   |
plant   945 K--EISDLQ----------SVLTDIKLQLRDTQE-TKSKEISDLQSALQDMQLEIEELSKGLEMT 996

  Fly   962 IDVESSKQMVDDVFRFLNDEPDAALRKLNNISSGDTIRLPKSVPNNIDTSDFSYLKYAATYFGGG 1026
            .|:.:..:.:.:....|.::.|.:.||...||.....|:...|| .||.|....|          
plant   997 NDLAAENEQLKESVSSLQNKIDESERKYEEISKISEERIKDEVP-VIDQSAIIKL---------- 1050

  Fly  1027 ATAQHERKPLKKSLLKHEHPIDEMASKAIWLTILRFMGDLPDVVSSPTLHVFDNENLMSDLASLL 1091
               :.|.:.||..:...|..|||:              |.....:||.:    .|.|..|:    
plant  1051 ---ETENQKLKALVSSMEEKIDEL--------------DRKHDETSPNI----TEKLKEDV---- 1090

  Fly  1092 NTSDSYKPRLFVRQSQRRIPKPLASGEKEAQEFYQHWLNVPTSHLEKIHFIIGHGII-------- 1148
              |..|:....:.....|:...:.|.||:..|..    |..|...|:..:|:....:        
plant  1091 --SFDYEIVSNLEAENERLKALVGSLEKKINESG----NNSTDEQEEGKYILKEESLTEDASIDN 1149

  Fly  1149 --------KNSLRDEILAQICKQL------YLNPSRSSYSRGWLLLSLCLSCFPPSKEFEPHLRS 1199
                    :|...:::::.:.|::      |...||           ||          |..|:.
plant  1150 ERVKKLADENKDLNDLVSSLEKKIDETEKKYEEASR-----------LC----------EERLKQ 1193

  Fly  1200 FMKQGTAQLQATPSLQRLE---------------RTLVNGP--RCQPPSLFELHAIRGRHPLRLD 1247
            .:...|..:....|:||||               :.|||..  |..|...|     .|..||.  
plant  1194 ALDAETGLIDLKTSMQRLEEKVSDMETAEQIRRQQALVNSASRRMSPQVSF-----TGAPPLE-- 1251

  Fly  1248 IHLMDGQQ--------RRLQVDAASTAR------EAVNQLCQGMGLTDTFGFG---LVMSLNGKL 1295
                :|.|        ||...::...:|      |.|:.|.:.:.....|..|   ..:::...|
plant  1252 ----NGHQEPLAPIPSRRFGTESFRRSRIERQPHEFVDVLLKCVSKNIGFSHGKPVAALTIYKCL 1312

  Fly  1296 MP---LGAGQEHVLDAI-----SECEQRQLD---APW------KLYI----RKEMFATWYDPSMD 1339
            |.   ..|.:..:.|.|     |..|.::.|   |.|      .|::    .::..:|...|:..
plant  1313 MRWKIFEAEKTSIFDRIVPVFGSAIENQEDDNHLAYWLTNTSTLLFLLQRSLRQQSSTGSSPTKP 1377

  Fly  1340 PKATQLIYKQILNGLKCGEYRCRSEKDIAMVCALACFVEYGPGEILRLKPSEITAFVPSDLLAPG 1404
            |:.|. .:.::..|     :|..|..:::..........| |..:.:   .::||:|        
plant  1378 PQPTS-FFGRMTQG-----FRSTSSPNLSTDVVQQVDARY-PALLFK---QQLTAYV-------- 1424

  Fly  1405 ERAIENWSRLIAATYEKSSYVKEEQNDLLLEAQKRAKEDICLFAHLSWPMRHSR---LFEVVRKE 1466
                |....:|...      ||.|.:.||....:..||..|..:.::.|.:.|.   ..:...:.
plant  1425 ----ETMYGIIREN------VKREVSSLLSSCIQSLKESSCDSSVVNSPSKSSEENLPAKSSEEN 1479

  Fly  1467 GPKLQSDELMLGINSAGLFLIDETEQVLASCCFSEVLKVHVESDDKLHVMTFQHVNFVLQ---CS 1528
            .||..|:|     ||......|::.|.|              |||.......|.|....:   .|
plant  1480 SPKKSSEE-----NSPKESSGDKSPQKL--------------SDDNSPSKEGQAVKSSEENSPAS 1525

  Fly  1529 SAQDANEVINYMLDNLRQRSSY-----------------GVALDPVVEGDLEDCLVLNPGDLIEF 1576
            |.|...|.:||:|  :..:.:|                 .|.|...:..:.|.|.| |.|  |:.
plant  1526 SWQSIIEFLNYIL--ITWKKNYVPLFLVQKMFSQTFQYINVQLFNSLLLEREYCTV-NMG--IKV 1585

  Fly  1577 EAGVTGAQLMAGNAQDCYRGCVNGQWGQFLAGNVRVLATLTKPSEKL 1623
            :||:...:.....|.:.:   |...|.:.......|:..:|:|...:
plant  1586 KAGLDELESWCSQATEEF---VGSSWDELKHTRQAVVLLVTEPKSTI 1629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo28B1NP_723294.1 MYSc 62..737 CDD:214580 287/694 (41%)
MYSc_Myo7 81..726 CDD:276832 278/658 (42%)
IQ 765..785 CDD:197470 5/19 (26%)
DUF4355 827..>887 CDD:290964 16/73 (22%)
MyTH4 1031..1239 CDD:295320 45/246 (18%)
B41 1248..1429 CDD:214604 37/218 (17%)
FERM_N 1248..>1288 CDD:286467 10/56 (18%)
FERM_B-lobe 1342..1429 CDD:271216 13/86 (15%)
PH-like 1454..1547 CDD:302622 22/98 (22%)
MyTH4 1674..1819 CDD:214535
B41 1827..2032 CDD:214604
FERM_N 1829..>1877 CDD:286467
FERM_M 1936..2032 CDD:278785
FERM_C2_MyoVII 2028..2121 CDD:270020
XIANP_171954.1 Myosin_N 11..47 CDD:280832 10/48 (21%)
MYSc 59..727 CDD:214580 287/682 (42%)
MYSc_Myo11 75..719 CDD:276835 278/658 (42%)
SPEC 869..1036 CDD:295325 39/191 (20%)
TACC 974..1189 CDD:282818 48/277 (17%)
MyosinXI_CBD 1278..1699 CDD:271259 78/407 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 530 1.000 Domainoid score I63
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8405
orthoMCL 1 0.900 - - OOG6_100101
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.810

Return to query results.
Submit another query.