DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Myo28B1 and XIB

DIOPT Version :9

Sequence 1:NP_723294.1 Gene:Myo28B1 / 53515 FlyBaseID:FBgn0040299 Length:2122 Species:Drosophila melanogaster
Sequence 2:NP_171912.2 Gene:XIB / 839246 AraportID:AT1G04160 Length:1500 Species:Arabidopsis thaliana


Alignment Length:1449 Identity:434/1449 - (29%)
Similarity:661/1449 - (45%) Gaps:299/1449 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDAGYSPRKGEYVWVK-PQNTTSEFAVPFGARIVRTEKTQTLVCDDRNKQFWVPAGDVLKAMHIT 64
            |.|.::|..|.:|||: |.....:      ..:|.....|..|.....||..|...::.......
plant     1 MVATFNPAVGSHVWVEDPDEAWLD------GEVVEINGDQIKVLCASGKQVVVKDSNIYPKDVEA 59

  Fly    65 SQEDVEDMITLGDLQEYTILRNLQNRYAKQLIYTYTGSMLVAINPYQILP-IYTNREIQLYRNKS 128
            ....||||..|..|.|..:|:|||:||....|||||||:|:|:||::.|| :|::..:..|:..|
plant    60 PASGVEDMTRLAYLHEPGVLQNLQSRYDINEIYTYTGSILIAVNPFRRLPHLYSSHMMTQYKGAS 124

  Fly   129 LAELPPHIFAISDNAFQRLQRLKENQCVVISGESGAGKTESTKLILQYLAAISGKHS-----WIE 188
            |.||.||.||::|.|::::.....:|.:::||||||||||||||:::|||.:.|:.:     .:|
plant   125 LGELSPHPFAVADAAYRQMVNEGVSQSILVSGESGAGKTESTKLLMRYLAFMGGRGAATEGRTVE 189

  Fly   189 QQIIEANPIMEAFGNAKTVRNDNSSRFGKYIEIRFTPQGAIQGARIQQYLLEKSRIVFQSRDERN 253
            |:::|:||::|||||||||:|:|||||||::||:|...|.|.||.|:.||||:||:...|..|||
plant   190 QKVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDQSGRISGAAIRTYLLERSRVCQVSDPERN 254

  Fly   254 YHIFYCMLAGLSTAERERLKLQEQSPSQYHYLAQGGCFTLPGRGDAKDFADIRAAMKVLSFKPEE 318
            ||.|| ||......:.::.||.:  |..||||.|..|..|....||:::...:.||.|:....||
plant   255 YHCFY-MLCAAPEEDAKKFKLGD--PKIYHYLNQSKCIQLDAMNDAEEYHATKKAMDVVGISSEE 316

  Fly   319 VWSILSLLAAILHLGNLRFT-ATEVANLATAEIDDTPNLQRVAQLLGIPISALNAALTQRTIFVH 382
            ..:|..::|:||||||:.|. .||:.:....:.....:|:..|:||.....:|..:|.:|.:...
plant   317 QDAIFRVVASILHLGNIEFAKGTEIDSSIPRDEKSWFHLKTAAELLMCNEKSLEDSLCKRIMATR 381

  Fly   383 GEHVTTSLSKEAAIEGRDAFVKSLYDGIFVRIVRRINETINKQVDQPMNSIGVLDIFGFENFDNN 447
            .|.:|.:|..|||:..|||..|.:|..:|..:|.:||.:|.:..|... .||||||:|||:|..|
plant   382 DETITKTLDPEAALLSRDALAKVMYSRLFDWLVEKINTSIGQDPDSKY-LIGVLDIYGFESFKTN 445

  Fly   448 SFEQLCINYANENLQQFFVGHIFKMEQDEYQNEHINWQHIEFQDNQQILDLIGMKPMNLMSLIDE 512
            ||||.|||..||.|||.|..|:|||||:||:.|.|||.:|||.|||.|||||..||..:::|:||
plant   446 SFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEINWSYIEFVDNQDILDLIEKKPGGIIALLDE 510

  Fly   513 ESKFPKGTDQTLLEKLHVQHGNRSIYVKGKTTQTSLFGIRHYAGVVMYNPLGFLEKNRDSFSGDL 577
            ...||:.|.:|..:||:..:.|...:.|.|..::. |.|.||||.|.|....||:||:|....:.
plant   511 ACMFPRSTHETFAQKLYQTYKNHKRFTKPKLARSD-FTICHYAGDVTYQTELFLDKNKDYVIAEH 574

  Fly   578 RTLVQRSTNKYLVDIFPHEMPMDTAKKQ---PTLCVKFRNSLDMLMRTLSQAHPYFIRCIKPNEY 639
            :.|:..||..::.::||   |:....||   .::..:|:..|..|:..|:...|::|||||||..
plant   575 QALLNASTCSFVANLFP---PVSDDSKQSKFSSIGTRFKQQLVSLLEILNTTEPHYIRCIKPNNL 636

  Fly   640 KEPKNFDKELCVRQLRYSGMMETARIRRAGYPIRHAYRAFVERYRLLVPPV---GPLEQCDCRKL 701
            .:|..|:.:..::|||..|:||..||..||||.|..:..|:.|:.::.|.|   ...|...|:||
plant   637 LKPGIFENQNVLQQLRCGGVMEAIRISCAGYPTRKHFDEFLNRFGIIAPQVLDKNSNEPAACKKL 701

  Fly   702 ARQICEVALPADSDRQYGKTKLFLRDEDDASLELQRSQLMLKSIVTIQRGIRRVLFRRYMKRYRE 766
               :.:..|   ...|.||:|:|||....|.|:.:|::::.:|...|||.:|..|.::...:.|.
plant   702 ---LDKAGL---EGYQIGKSKVFLRAGQMADLDTRRTEILGRSASIIQRKVRSYLAQKTFIQLRI 760

  Fly   767 AIITVQRYWRGRLQRRKYQVMRQGFHRLGACIAAQQLTTKF------TMVRCRTIKLQALSRGYL 825
            :...:|...||.|.|..|:.||    |..|.:..|:...||      |.:...||.:||..||.:
plant   761 SATQIQAVCRGYLARSIYEGMR----REAAALKIQRDLRKFLARKAYTELFSATILIQAGMRGMV 821

  Fly   826 VRKDF----QKK-----------LLERRKQNQLKKEEL--------------LKLAKM------- 854
            .||:.    |.|           .|.|....:|||..:              ||..||       
plant   822 SRKELCLRRQTKAATIIQTRCRVYLARLHYRKLKKAAITTQCAWRGKVARKELKNLKMAARETGA 886

  Fly   855 ---------KEAEEL---------LR--LQQLKEQ------------------------KERE-- 873
                     |:.|||         :|  |::.|:|                        ||||  
plant   887 LQEAKNKLEKQVEELTWRLQLEKRMRTDLEEAKKQENAKYESSLEEIQNKFKETEALLIKEREAA 951

  Fly   874 ----------------QREQQEKRLQEEQRLKA---------EAAARNALAMAAVQQKRRTKPVK 913
                            .:|..||...|.::||.         :..|:.....|.:.|.|..:.:.
plant   952 KTVSEVLPIIKEVPVVDQELMEKLTNENEKLKGMVSSLEIKIDETAKELHETARISQDRLKQALA 1016

  Fly   914 QEAPKAPTLQARNSLPPPPTTLIVAAPLPTRPASAVTRINTIPESPGTIDVES----SKQMVDDV 974
            .|:..|....|...|....:.:.....:..:.....|.:.::...|.|..:::    .:..:::.
plant  1017 AESKVAKLKTAMQRLEEKISDMETEKQIMLQQTILNTPVKSVAGHPPTATIKNLENGHRTNLENQ 1081

  Fly   975 FRFL----NDEPDAALRKLNNI-------------SSGDTI------------------------ 998
            |..:    |....||.|:|.|:             |:|..|                        
plant  1082 FNEVEVNGNAGKSAAERQLENVDTLIDCVKENIGFSNGKPIAAFTIYKCLLHWKCFESEKTSAFD 1146

  Fly   999 RLPKSVPNNIDTSDFS-YLKY-----AATYF---------GGGATAQHERKPLKKSLLK------ 1042
            ||.:.:.:.|:..|.: :|.|     :|..|         |.||||. ::.|:..||..      
plant  1147 RLIEMIGSAIENEDDNGHLAYWLTNTSALLFLLQKSLKPAGAGATAS-KKPPITTSLFGRMALSF 1210

  Fly  1043 HEHPIDEMASKAIWLTILRFMGDLPDVVSSPTL-----------HVFD--NENLMSDLASLLNTS 1094
            ...|....|::|..|.::|     |.....|.|           .:|.  .:||..:|::|::..
plant  1211 RSSPNLAAAAEAAALAVIR-----PVEAKYPALLFKQQLAAYVEKIFGMIRDNLKKELSALISMC 1270

  Fly  1095 DSYKPRLFVRQSQRRIPKPLASGEKEAQEFYQHW------LN----------VPTSHLEKIHFII 1143
             ...||:    |:..|.:...|..|::...  ||      ||          ||...::|||   
plant  1271 -IQAPRI----SKGGIQRSARSLGKDSPAI--HWQSIIDGLNSLLAILKDNYVPLVLIQKIH--- 1325

  Fly  1144 GHGIIKNSLRDEILAQICKQLYLNPSRSSYSRGWLLLSLCLSCFPPSKEFEPHLRSFMKQGTAQL 1208
                  ......:..|:...|.|.....::|.|                      .|:|.|.|:|
plant  1326 ------TQTFSFVNVQLFNSLLLRKECCTFSNG----------------------EFVKSGLAEL 1362

  Fly  1209 Q---------ATPSLQRLE 1218
            :         |.||...|:
plant  1363 ELWCGQVNEYAGPSWDELK 1381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo28B1NP_723294.1 MYSc 62..737 CDD:214580 282/687 (41%)
MYSc_Myo7 81..726 CDD:276832 271/657 (41%)
IQ 765..785 CDD:197470 6/19 (32%)
DUF4355 827..>887 CDD:290964 29/157 (18%)
MyTH4 1031..1239 CDD:295320 45/232 (19%)
B41 1248..1429 CDD:214604
FERM_N 1248..>1288 CDD:286467
FERM_B-lobe 1342..1429 CDD:271216
PH-like 1454..1547 CDD:302622
MyTH4 1674..1819 CDD:214535
B41 1827..2032 CDD:214604
FERM_N 1829..>1877 CDD:286467
FERM_M 1936..2032 CDD:278785
FERM_C2_MyoVII 2028..2121 CDD:270020
XIBNP_171912.2 Myosin_N 11..48 CDD:280832 9/42 (21%)
MYSc 57..731 CDD:214580 282/687 (41%)
MYSc_Myo11 76..720 CDD:276835 271/657 (41%)
IQ 830..852 CDD:197470 4/21 (19%)
Tropomyosin 877..1053 CDD:278679 28/175 (16%)
MyosinXI_CBD 1097..1470 CDD:271259 64/329 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 530 1.000 Domainoid score I63
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8405
orthoMCL 1 0.900 - - OOG6_100101
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.810

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