DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Myo28B1 and ATM2

DIOPT Version :9

Sequence 1:NP_723294.1 Gene:Myo28B1 / 53515 FlyBaseID:FBgn0040299 Length:2122 Species:Drosophila melanogaster
Sequence 2:NP_001078755.1 Gene:ATM2 / 835516 AraportID:AT5G54280 Length:1220 Species:Arabidopsis thaliana


Alignment Length:1091 Identity:365/1091 - (33%)
Similarity:555/1091 - (50%) Gaps:133/1091 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GEYVWVKPQNTTSEFAVPF--GARIVRTEKTQTLVCDDRNKQFWVPAG-DVLKAMHITSQEDVED 71
            |::...|.|:|:::.::..  .|.:|:. .|:.|          .||. |:|        |.|||
plant   172 GQWQLGKIQSTSADTSLVMLSTANVVKV-STEEL----------FPANPDIL--------EGVED 217

  Fly    72 MITLGDLQEYTILRNLQNRYAKQLIYTYTGSMLVAINPYQILPIYTNREIQLYRNKSLAELPPHI 136
            :|.|..|.|.::|.||:.||.:.:||:..|.:|:|:||::.:.||.|..|..|:.|.:.  .||:
plant   218 LIQLSYLNEPSVLYNLRVRYLQDVIYSKAGPVLIAVNPFKNVEIYGNDVISAYQKKVMD--APHV 280

  Fly   137 FAISDNAFQRLQRLKENQCVVISGESGAGKTESTKLILQYLAAISGKHSWIEQQIIEANPIMEAF 201
            :|::|.|:..:.|.::||.::|||||||||||:.|..:|||||:.|....:|.:|::...|:|||
plant   281 YAVADAAYDEMMREEKNQSLIISGESGAGKTETAKFAMQYLAALGGGSCGVEYEILKTTCILEAF 345

  Fly   202 GNAKTVRNDNSSRFGKYIEIRFTPQGAIQGARIQQYLLEKSRIVFQSRDERNYHIFYCMLAGLST 266
            |||||.||.|||||||.|||.|:..|.|.||:::.:||||||:|.....||:|||||.:.||.|.
plant   346 GNAKTSRNANSSRFGKLIEIHFSAMGKICGAKLETFLLEKSRVVQLFNGERSYHIFYELCAGASP 410

  Fly   267 AERERLKLQEQSPSQYHYLAQGGCFTLPGRGDAKDFADIRAAMKVLSFKPEEVWSILSLLAAILH 331
            ..:|||||  ::.|:|.||:|..|.|:.|..||:.|..:..|..::....|......:||||:|.
plant   411 ILKERLKL--KTASEYTYLSQSDCLTIAGVDDAQKFHKLLEAFDIVQIPKEHQERAFALLAAVLW 473

  Fly   332 LGNLRFTATEVANLATAEIDDTPNLQRVAQLLGIPISALNAALTQRTIFVHGEHVTTSLSKEAAI 396
            |||:.|..|:..|......|:.  :...|.|:|.....|...|:.|.:....:.:...|:...|.
plant   474 LGNVSFRVTDNENHVEVVADEA--VANAAMLMGCNTEELMVVLSTRKLQAGTDCIAKKLTLRQAT 536

  Fly   397 EGRDAFVKSLYDGIFVRIVRRINETINKQVDQPMNSIGVLDIFGFENFDNNSFEQLCINYANENL 461
            :.||...|.:|..:|..:|.:||..:.....:...||.:|||:|||:|.||||||.|||||||.|
plant   537 DMRDGIAKFIYANLFDWLVEQINIALEVGKSRTGRSISILDIYGFESFKNNSFEQFCINYANERL 601

  Fly   462 QQFFVGHIFKMEQDEYQNEHINWQHIEFQDNQQILDLIGMKPMNLMSLIDEESKFPKGTDQTLLE 526
            ||.|..|:||:||:||:.:.|:|..:||.|||:.||||..||:.|:||:||||.|||.||.|...
plant   602 QQHFNRHLFKLEQEEYEEDGIDWTKVEFVDNQECLDLIEKKPIGLLSLLDEESNFPKATDLTFAN 666

  Fly   527 KLHVQHGNRSIYVKGKTTQTSLFGIRHYAGVVMYNPLGFLEKNRDSFSGDLRTLVQRSTNKYLVD 591
            ||. ||...:...||:..:.  |.:.||||.|:|:..||||||||....||..|:. |.:..|:.
plant   667 KLK-QHLKTNSCFKGERGRA--FRVNHYAGEVLYDTNGFLEKNRDPLPADLINLLS-SCDCQLLK 727

  Fly   592 IFPHEMPMDTAK-------KQPTLCVKFRNSLDMLMRTLSQAHPYFIRCIKPNEYKEPKNFDKEL 649
            :|..:|...:.|       ...|:..||:..|..||..|....|:||||||||..:.|:.::::|
plant   728 LFSTKMRGKSQKPLMLSDSTNQTVGTKFKGQLFKLMNKLENTSPHFIRCIKPNSKQLPRVYEEDL 792

  Fly   650 CVRQLRYSGMMETARIRRAGYPIRHAYRAFVERYRLLVPPVGPLEQCDCRKLARQICEVALPADS 714
            .::|||..|::|..||.|:|||.|..::.|..||..|:..         :|:|:....|::..  
plant   793 VLQQLRCCGVLEVVRISRSGYPTRLTHQEFAGRYGFLLSD---------KKVAQDPLSVSIAV-- 846

  Fly   715 DRQY---------GKTKLFLRDEDDASLELQRSQLMLKSIVTIQRGIRRVLFRRYMKRYREAIIT 770
            .:||         |.|||:||.......| .|.:.:|:.||.:|:..|..|.|.|.:..|:..:.
plant   847 LKQYDVHPEMYQVGYTKLYLRTGQIGIFE-DRRKKVLQGIVGLQKHFRGHLSRAYFQNMRKVTLV 910

  Fly   771 VQRYWRGRLQRRKYQVMRQGFHRLGACIAAQQLTTKFTMVRCRTIKLQALSRGYLVRKDFQKKLL 835
            :|.|.||...||.:....: ||   |...::..|.:.:.|    |.||:..||:|.||.|.....
plant   911 LQSYIRGENARRLFDTEAK-FH---ADSVSEASTDELSAV----IHLQSAVRGWLARKHFNSMQR 967

  Fly   836 ERRKQNQLKKEELLKLAKMKEAEEL--------------LRLQQLKEQKEREQREQQEKRLQEEQ 886
            ::..:|...|.:.....::.|.:::              |:.:.||.:....|:|::...|:|:.
plant   968 QKELRNVATKSKRKAGRRISEDKDIPLEQPQVQPTSMSDLQKRILKSEAALSQKEEENTALREQL 1032

  Fly   887 RLKAEAAARNALAMAAVQ---QKRRTKPVKQEAPKAPTLQARN-----------SLPP----PPT 933
            |...|..:...:.|.:::   ||:.:......|....:|.|.:           |:.|    ...
plant  1033 RQFEERWSEYDIKMKSMEETWQKQMSSLQMSLAAARKSLAAESITGQAGGRQDTSISPFGYDSED 1097

  Fly   934 TLIVAAPLPTRPASAVTRINT----IPESPGTID-VESSKQMVDDVFRFLNDEPDAALRKLNNIS 993
            |:....|....|.:..|..||    |.|..|::: |....:..|.  |.||.:.||  |.:..:.
plant  1098 TMSTGTPGVRTPTNKFTNGNTPELRIRELNGSLNAVNHLAREFDQ--RRLNFDEDA--RAIVEVK 1158

  Fly   994 SGDTIRLPKSVPNNIDTSDFSYLKYAATYFGGGATAQHERKPLKKSLLKHE 1044
            .|     |::.||                   |...||.....::..|:.|
plant  1159 LG-----PQATPN-------------------GQQQQHPEDEFRRLKLRFE 1185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo28B1NP_723294.1 MYSc 62..737 CDD:214580 277/690 (40%)
MYSc_Myo7 81..726 CDD:276832 266/660 (40%)
IQ 765..785 CDD:197470 7/19 (37%)
DUF4355 827..>887 CDD:290964 13/73 (18%)
MyTH4 1031..1239 CDD:295320 3/14 (21%)
B41 1248..1429 CDD:214604
FERM_N 1248..>1288 CDD:286467
FERM_B-lobe 1342..1429 CDD:271216
PH-like 1454..1547 CDD:302622
MyTH4 1674..1819 CDD:214535
B41 1827..2032 CDD:214604
FERM_N 1829..>1877 CDD:286467
FERM_M 1936..2032 CDD:278785
FERM_C2_MyoVII 2028..2121 CDD:270020
ATM2NP_001078755.1 MYSc 208..879 CDD:214580 280/700 (40%)
MYSc_Myo8 227..867 CDD:276834 266/660 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8405
orthoMCL 1 0.900 - - OOG6_100101
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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