DRSC/TRiP Functional Genomics Resources

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Protein Alignment Myo28B1 and XIK

DIOPT Version :9

Sequence 1:NP_723294.1 Gene:Myo28B1 / 53515 FlyBaseID:FBgn0040299 Length:2122 Species:Drosophila melanogaster
Sequence 2:NP_001318612.1 Gene:XIK / 832171 AraportID:AT5G20490 Length:1531 Species:Arabidopsis thaliana


Alignment Length:1395 Identity:428/1395 - (30%)
Similarity:659/1395 - (47%) Gaps:289/1395 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GEYVWVKPQNTT---SEFAVPFGARI-VRTEKTQTLVCDDRN---KQFWVPAGDVLKAMHITSQE 67
            |.:||::.....   .|.....|..: ..|...:|:|.:..|   |....|.|            
plant    10 GSHVWIEDPGAAWIDGEVVKINGEEVHAHTTNGKTVVANIANVFPKDTEAPPG------------ 62

  Fly    68 DVEDMITLGDLQEYTILRNLQNRYAKQLIYTYTGSMLVAINPYQILP-IYTNREIQLYRNKSLAE 131
            .|:||..|..|.|..:|.||..||....||||||::|:|:||:|.|| :|....::.|:.....|
plant    63 GVDDMTKLSYLHEPGVLNNLAMRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAGFGE 127

  Fly   132 LPPHIFAISDNAFQRLQRLKENQCVVISGESGAGKTESTKLILQYLAAISGKHS----WIEQQII 192
            |.||:|||::.|::.:....::..:::||||||||||:||::::|||.:.|:..    .:|||::
plant   128 LSPHVFAIAEVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVL 192

  Fly   193 EANPIMEAFGNAKTVRNDNSSRFGKYIEIRFTPQGAIQGARIQQYLLEKSRIVFQSRDERNYHIF 257
            |:||::||||||||:||:|||||||::|::|...|.|.||.::.||||:||:...|..|||||.|
plant   193 ESNPVLEAFGNAKTLRNNNSSRFGKFVELQFDNCGRISGAAVRTYLLERSRVCQISDPERNYHCF 257

  Fly   258 YCMLAGLSTAERERLKLQEQSPSQYHYLAQGGCFTLPGRGDAKDFADIRAAMKVLSFKPEEVWSI 322
            | :|......|||:.||.:  |..:|||.|..|:.|.|..|.:::...|.||.::....||..:|
plant   258 Y-LLCAAPPEEREKFKLGD--PKLFHYLNQSKCYKLDGVDDTEEYLATRRAMDIVGISEEEQDAI 319

  Fly   323 LSLLAAILHLGNLRFT-ATEVANLATAEIDDTPNLQRVAQLLGIPISALNAALTQRTIFVHGEHV 386
            ..::||||||||:.|. ..|:.:....:.....:|...|:||......:..||.:|.:....|.:
plant   320 FRVVAAILHLGNVNFAKGKEIDSSVLKDEKSRYHLDVCAELLRCDAKKMEDALIKRVMVTPEEVI 384

  Fly   387 TTSLSKEAAIEGRDAFVKSLYDGIFVRIVRRINETINKQVDQPMNS---IGVLDIFGFENFDNNS 448
            |.:|..::|...|||..|::|..:|..:|.:||.:|.    |..||   ||||||:|||:|..||
plant   385 TRTLDPDSATGSRDALAKTIYSRLFDWLVDKINNSIG----QDPNSKTIIGVLDIYGFESFKINS 445

  Fly   449 FEQLCINYANENLQQFFVGHIFKMEQDEYQNEHINWQHIEFQDNQQILDLIGMKPMNLMSLIDEE 513
            |||.|||:.||.|||.|..|:|||||::|..|.|||.:|||.||:.:|:||..||..:::|:||.
plant   446 FEQFCINFTNEKLQQHFNQHVFKMEQEDYTKEEINWSYIEFVDNKDVLELIEKKPGGVIALLDEA 510

  Fly   514 SKFPKGTDQTLLEKLHVQHGNRSIYVKGKTTQTSLFGIRHYAGVVMYNPLGFLEKNRDSFSGDLR 578
            ..|||.|.:|..:||:....|...:.|.|.::|| |.|.||||.|.|....||:||:|....:.:
plant   511 CMFPKSTHETFAQKLYQTFKNYKRFTKPKLSRTS-FAISHYAGEVTYQADLFLDKNKDYVVAEHQ 574

  Fly   579 TLVQRSTNKYLVDIFPHEMPMDTAKKQ--PTLCVKFRNSLDMLMRTLSQAHPYFIRCIKPNEYKE 641
            .|:..|::.::..:|| .:|.:|:.|.  .::..:|:..|..||.|||...|::|||:|||...:
plant   575 DLLIASSDTFVAGLFP-RLPEETSSKTKFSSIGSRFKLQLQSLMETLSSTEPHYIRCVKPNNVLK 638

  Fly   642 PKNFDKELCVRQLRYSGMMETARIRRAGYPIRHAYRAFVERYRLLVPPVGPLEQCDCRKLARQIC 706
            |..|:....::|||..|::|..||..||||.:..:..|:.|:.:|.|.|  ||.....|:|   |
plant   639 PAIFENVNVIQQLRCGGVLEAIRISCAGYPTKRTFYEFLNRFGVLAPEV--LEGNYDDKVA---C 698

  Fly   707 EVALPADSDRQY--GKTKLFLRDEDDASLELQRSQLMLKSIVTIQRGIRRVLFRRYMKRYREAII 769
            ::.|.....:.|  ||||:|||....|.|:.:|::::..:...|||..|..:..:..:..|.|.|
plant   699 KMLLDKIGLKGYELGKTKVFLRAGQMAELDARRAEVLGNAARRIQRQSRTFIACKEFRALRGAAI 763

  Fly   770 TVQRYWRGRLQRRKYQVMRQGFHRLGACIAAQQLTTK------FTMVRCRTIKLQALSRGYLVRK 828
            .:|...||:|....|:.||    |..|.:..|::..:      :..:|..||.:|...||.:.|.
plant   764 VLQSNCRGKLACNLYEEMR----RQAAAVKIQKIFRRHIARESYLRIRHSTITVQTALRGMVARN 824

  Fly   829 DFQKK-------LLERRKQN--------QLKKEEL--------------LKLAKM---------- 854
            :|:.:       :::.|.::        ||:|..|              |:..||          
plant   825 EFRFRKQMKAATIIQARLRSHLTHSYYKQLQKAALSTQCGWRSRVARKELRTLKMAARDTGALRE 889

  Fly   855 ------KEAEELL-RLQ-------QLKEQKEREQREQQEKRLQEEQRLKAEAAARNALAMAAVQQ 905
                  |..|||. |||       :|:|.|.:|..:|||  ..|..||:.|.|  ||   |.:::
plant   890 AKDKLEKRVEELTWRLQLEKRQRTELEEAKTQEYAKQQE--ALETMRLQVEEA--NA---AVIRE 947

  Fly   906 KRRTKPVKQEAP----KAPTL----QARNSLPPPPTTLIVAAPLPTRPASAVTRINTIPESPGT- 961
            :...:...:|||    :.|.|    :..|||......|..:.....:.|..:.:..:..|:..: 
plant   948 REAARKAIEEAPPVIKETPVLVEDTEKINSLTSEVEALKASLQAERQAAENLRKAFSEAEARNSE 1012

  Fly   962 --IDVESSKQMVDDVFRFLNDEPDAALRKLNNISS----------------------GDTIRLPK 1002
              .::|::.:..|.    |::.......||:|..|                      ..|:.||:
plant  1013 LATELENATRKADQ----LHESVQRLEEKLSNSESEIQVLRQQALAISPTSRTMATRSKTMLLPR 1073

  Fly  1003 SVPNNIDTSDFSYLKYAATYFGGGATA-----------QHERKPLKKSLLKHEHPIDEMASKAIW 1056
            : |.|            ..|..||...           :.|.|| :|.|.:.:....::..|.|.
plant  1074 T-PEN------------GNYLNGGTKTTPDMTLAVREPESEEKP-QKHLNEKQQENQDLLVKCIS 1124

  Fly  1057 LTILRFMGDLP---DVVSSPTLH----------VFD---------------NENL---MSDLASL 1090
            .. |.:.||.|   .|:....||          |||               ||.|   :|:.|:|
plant  1125 QN-LGYNGDKPVAACVIYKCLLHWRSFEVERTSVFDRIIQTIATAIEVPDNNEVLAYWLSNSATL 1188

  Fly  1091 L---------------------NTSDSYKPRLFVRQSQRRIPKPLASG----------------E 1118
            |                     .||.|    ||.|.||.....|.::|                :
plant  1189 LLLLQRTLKATGAASLTPQRRRTTSAS----LFGRMSQGLRGSPQSAGLSFLNRQGLTKLDDLRQ 1249

  Fly  1119 KEAQE---FYQHWLNVPTSHLEKIHFIIGHGIIKNSLRDEILAQICKQLYLNPSRSSYSRGWLLL 1180
            .||:.   .::..|   |:.||||     :|:|:::|:.||          :|          ||
plant  1250 VEAKYPALLFKQQL---TAFLEKI-----YGMIRDNLKKEI----------SP----------LL 1286

  Fly  1181 SLCLSCFPPSKEFEPHLRSFMKQGTAQLQA 1210
            .||:.....|       |:.:.:|.||..|
plant  1287 GLCIQAPRTS-------RASLVKGRAQANA 1309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo28B1NP_723294.1 MYSc 62..737 CDD:214580 276/687 (40%)
MYSc_Myo7 81..726 CDD:276832 266/657 (40%)
IQ 765..785 CDD:197470 7/19 (37%)
DUF4355 827..>887 CDD:290964 25/112 (22%)
MyTH4 1031..1239 CDD:295320 58/251 (23%)
B41 1248..1429 CDD:214604
FERM_N 1248..>1288 CDD:286467
FERM_B-lobe 1342..1429 CDD:271216
PH-like 1454..1547 CDD:302622
MyTH4 1674..1819 CDD:214535
B41 1827..2032 CDD:214604
FERM_N 1829..>1877 CDD:286467
FERM_M 1936..2032 CDD:278785
FERM_C2_MyoVII 2028..2121 CDD:270020
XIKNP_001318612.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 530 1.000 Domainoid score I63
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8405
orthoMCL 1 0.900 - - OOG6_100101
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.810

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