DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Myo28B1 and XIF

DIOPT Version :9

Sequence 1:NP_723294.1 Gene:Myo28B1 / 53515 FlyBaseID:FBgn0040299 Length:2122 Species:Drosophila melanogaster
Sequence 2:NP_001323600.1 Gene:XIF / 817748 AraportID:AT2G31900 Length:1557 Species:Arabidopsis thaliana


Alignment Length:1552 Identity:435/1552 - (28%)
Similarity:677/1552 - (43%) Gaps:366/1552 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GEYVWVKP-------------QNTTSEFAVPFGARIVRTEKTQTLVCDDRNKQFWVPAGDVLKAM 61
            |.:|||:.             :.|.::.....|..:|.:  ..::...|....   |||      
plant    10 GSHVWVEDPELAWISGEVTEIKGTNAKIVTANGKTVVAS--ISSIYPKDTEAP---PAG------ 63

  Fly    62 HITSQEDVEDMITLGDLQEYTILRNLQNRYAKQLIYTYTGSMLVAINPYQILP-IYTNREIQLYR 125
                   |:||..|..|.|..:|.||..|:|...||||||::|:|:||:|.|| :|:...::.|:
plant    64 -------VDDMTKLAYLHEPGVLHNLDCRFALNEIYTYTGNILIAVNPFQRLPHLYSVHMMEQYK 121

  Fly   126 NKSLAELPPHIFAISDNAFQRLQRLKENQCVVISGESGAGKTESTKLILQYLAAISGKHSW---- 186
            ..:..||.||:||::|.:::.:.....:|.:::||||||||||:||::::|||.:.|:...    
plant   122 GAAFGELSPHLFAVADTSYRAMINEARSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRS 186

  Fly   187 IEQQIIEANPIMEAFGNAKTVRNDNSSRFGKYIEIRFTPQGAIQGARIQQYLLEKSRIVFQSRDE 251
            :|||::|:||::|||||||||:|:|||||||::||:|..:|.|.||.|:.||||:||:...|..|
plant   187 VEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKRGKISGAAIRTYLLERSRVCQVSDPE 251

  Fly   252 RNYHIFYCMLAGLSTAERERLKLQEQSPSQYHYLAQGGCFTLPGRGDAKDFADIRAAMKVLSFKP 316
            ||||.|| ||......|.::.|:.:  |..:|||.|..|:.:....||:::.:.|.||.::....
plant   252 RNYHCFY-MLCAAPPEEAKKFKVGD--PRTFHYLNQTNCYEVSNVDDAREYLETRNAMDIVGIGQ 313

  Fly   317 EEVWSILSLLAAILHLGNLRFTATEVANLATAEIDDTP-NLQRVAQLLGIPISALNAALTQRTIF 380
            |...:|..::||||||||:.|...|.|:.:....|.:. :||..|:||......:..:|.:|.|.
plant   314 EAQDAIFRVVAAILHLGNVNFIKGEEADSSKLRDDKSRYHLQTAAELLMCNEKMMEDSLCKRVIV 378

  Fly   381 VHGEHVTTSLSKEAAIEGRDAFVKSLYDGIFVRIVRRINETINKQVDQPMNSIGVLDIFGFENFD 445
            ....::|..|..|:|...|||..|::|..:|..||.:||.:|.:..| ..:.||||||:|||:|.
plant   379 TPDGNITKPLDPESAASNRDALAKTVYSRLFDWIVDKINSSIGQDPD-AKSLIGVLDIYGFESFK 442

  Fly   446 NNSFEQLCINYANENLQQFFVGHIFKMEQDEYQNEHINWQHIEFQDNQQILDLIGMKPMNLMSLI 510
            .|||||||||..||.|||.|..|:|||||:||..|.|||.::||.|||.:||||..||..:::|:
plant   443 INSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTREEINWSYVEFVDNQDVLDLIEKKPGGIIALL 507

  Fly   511 DEESKFPKGTDQTLLEKLHVQHGNRSIYVKGKTTQTSLFGIRHYAGVVMYNPLGFLEKNRDSFSG 575
            ||...|||.|.:|..:|::..:.....:.|.|..||: |.:.||||.|.|:...||:||:|....
plant   508 DEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLAQTA-FTVNHYAGDVTYSAEQFLDKNKDYVVA 571

  Fly   576 DLRTLVQRSTNKYLVDIFPHEMPMDTAK--KQPTLCVKFRNSLDMLMRTLSQAHPYFIRCIKPNE 638
            :.:.|:..|...::.::|| .:|.|.:|  |..::..:|:..|..||.||:...|::|||:|||.
plant   572 EHQALLDASKCSFVANLFP-PLPEDASKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNA 635

  Fly   639 YKEPKNFDKELCVRQLRYSGMMETARIRRAGYPIRHAYRAFVERYRLLVP--PVGPLEQCDCRKL 701
            ..:|..|:.:..:.|||..|::|..||..||||.:.|:..|::|:.:|..  |.|..|:..|..:
plant   636 VLKPGIFENDNVLNQLRCGGVLEAIRISCAGYPTKRAFDEFLDRFVMLATDVPEGSDEKSACASI 700

  Fly   702 ARQICEVALPADSDRQYGKTKLFLRDEDDASLELQRSQLMLKSIVTIQRGIRRVLFRRYMKRYRE 766
            ..::      .....|.||||:|||....|.|:.:|::::..:...|||.||..|.|:.....:.
plant   701 CNKM------GLKGYQIGKTKIFLRAGQMAELDARRTEVLAGATKLIQRQIRTYLTRKEFLGQKR 759

  Fly   767 AIITVQRYWRGRLQRRKYQVMRQGFHRLGACIAAQ-------------QLTTKFTMVRC------ 812
            |.|.:|:.||.:|.|:.||.||    |..|.|..|             :|....|:::.      
plant   760 ATIYMQKLWRAKLARKLYQNMR----REAASICIQKNIRAHRARKNYTKLQASATVIQTGLRTMS 820

  Fly   813 -----------------------------------RTIKLQALSRGYLVRKDFQKKLLERRKQNQ 842
                                               .|:.||.|.|..:.||:.:...:..|:...
plant   821 ARNKHRHRRRTKAAIIIQREWRRHQVHEAYKKHKKATLALQCLWRAKVARKELKNLRMAARETGA 885

  Fly   843 LK--KEELLKLAKMKEAEELL-RLQQLKEQK-EREQREQQE-----KRLQEEQRLKAEAAARNAL 898
            ||  |::|     .|..|||. ||:..|.|| :.|..:.||     ..|.|.|....||.|    
plant   886 LKEAKDKL-----EKRVEELTWRLELEKNQKADLEDAKAQEIAKLQNNLTELQEKLDEAYA---- 941

  Fly   899 AMAAVQQKRRTK-------PVKQEAPKAPTLQ------ARNSLPPPPTTL--------IVAAPLP 942
              |.::.|...|       |:.:|.|.....|      ..|.|......|        :....|.
plant   942 --AIIRDKEAAKLAIEQAPPIIKEVPVVDNTQLELLNSQNNELEVEVAKLKGKIKEFEVKCFALE 1004

  Fly   943 TRPASAVT-----------------RINTIPESPGTIDVESSKQMVDDVFRFLNDEPDAA----- 985
            ....::||                 |::|     ...::||..|:       |..:..||     
plant  1005 NDSRASVTEAEDAKSKAVEFQEIIERLHT-----NLSNLESENQV-------LRQQALAASTSVE 1057

  Fly   986 -LRKLNNI--------SSGDTIR---------LP--------KSVPNNIDTSDFSYLKYAATYF- 1023
             :.:||::        |..:|:|         :|        |::.|...|.:....|...... 
plant  1058 EIGELNSLKDKVAILESENETLRRQTESAEKTMPPARVFASEKNLENEHQTKEIQATKEPRNPIN 1122

  Fly  1024 -----GGGATAQHERKPLKKSLLKHEHPIDEMASKAIWL-------------------------- 1057
                 |.....|.|...:....|..|...|...|.|.|:                          
plant  1123 VLAKQGSLTDRQQESHEVLMKCLTDERRFDNEKSVAAWIVYKALLQWRLFEAEKTNIFDRIVHKI 1187

  Fly  1058 --TILRFMGDLPDV-----VSSPTLHV------FDNEN------LMSDLASL------------- 1090
              :|.:...|..::     .||..|::      |.|.|      ..|..|:|             
plant  1188 RSSIEKGQDDTRELAYWLTTSSTLLYLLQSTLKFSNTNNAASRRNRSSHATLFGRLVQGMQPSSV 1252

  Fly  1091 -LNTSDSYKPRLFVRQSQRRIPKPLASGEKEAQEFYQHWLNVPTSHLEKIHFIIGHGIIKNSLRD 1154
             |.||..|.....:...|:     :...:..|..|.||.    .:::||.     :|:|::.|:.
plant  1253 GLETSSGYSGMAGIPNDQQ-----MVEAKYPALLFKQHL----AAYVEKT-----YGMIRDKLKK 1303

  Fly  1155 EILAQICKQLYLNPSRSSYSRGWLLLSLCLSCFPPSK-------EFEPHLRSFMKQGTAQLQATP 1212
            ||          ||          ||:||:....|::       ....||.:..||..:.:|...
plant  1304 EI----------NP----------LLNLCIHAPRPTRAKTLRDVTKSIHLTTIAKQQASYVQWQN 1348

  Fly  1213 SLQRLERTLVNGPRCQPPSLF------------------------ELHAIRGRHPLRLDIHLM-- 1251
            .:.:||.||........||:.                        |..::.....|::.:|.:  
plant  1349 IVNKLEHTLTFMAENHVPSMITRKLFHQVFSYINVQLFNSLLLRRECCSVSNGEYLKMGLHELEQ 1413

  Fly  1252 -----DGQQRRLQVDAASTAREAV-----------------NQLCQGMGLTDTFGFG 1286
                 |.:..|...|.....|:||                 .::|..:.:...:..|
plant  1414 WCLKADDEATRSPWDELQHIRQAVMFLVSHQKTQKSLDEIAKEICPVLSIPQVYRIG 1470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo28B1NP_723294.1 MYSc 62..737 CDD:214580 273/684 (40%)
MYSc_Myo7 81..726 CDD:276832 263/654 (40%)
IQ 765..785 CDD:197470 7/19 (37%)
DUF4355 827..>887 CDD:290964 21/68 (31%)
MyTH4 1031..1239 CDD:295320 53/297 (18%)
B41 1248..1429 CDD:214604 9/63 (14%)
FERM_N 1248..>1288 CDD:286467 9/63 (14%)
FERM_B-lobe 1342..1429 CDD:271216
PH-like 1454..1547 CDD:302622
MyTH4 1674..1819 CDD:214535
B41 1827..2032 CDD:214604
FERM_N 1829..>1877 CDD:286467
FERM_M 1936..2032 CDD:278785
FERM_C2_MyoVII 2028..2121 CDD:270020
XIFNP_001323600.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 530 1.000 Domainoid score I63
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8405
orthoMCL 1 0.900 - - OOG6_100101
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.810

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