DRSC/TRiP Functional Genomics Resources

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Protein Alignment Myo28B1 and myo1ca

DIOPT Version :10

Sequence 1:NP_723294.1 Gene:Myo28B1 / 53515 FlyBaseID:FBgn0040299 Length:2122 Species:Drosophila melanogaster
Sequence 2:NP_001418059.2 Gene:myo1ca / 567536 ZFINID:ZDB-GENE-070705-190 Length:1045 Species:Danio rerio


Alignment Length:882 Identity:316/882 - (35%)
Similarity:486/882 - (55%) Gaps:62/882 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 RNKQFWVPAGDVLKAMHITSQED---VEDMITL-GDLQEYTILRNLQNRYAKQLIYTYTGSMLVA 106
            |.::..|..|..|......|..|   |:|.:.| ....|...:.||:.||.:.|||||.||:||:
Zfish     4 RRREVGVEGGVRLMMESALSARDRVGVQDFLLLENHNSEAAFIENLRRRYREGLIYTYIGSVLVS 68

  Fly   107 INPYQILPIYTNREIQLYRNKSLAELPPHIFAISDNAFQRLQRLKENQCVVISGESGAGKTESTK 171
            :|||:.|.||:.:.::.:|..:..|:.|||||::||:::.|:..:.:||::|||||||||||::|
Zfish    69 VNPYKELEIYSKQNMERHRGVNFYEISPHIFALADNSYRALRTERRDQCILISGESGAGKTEASK 133

  Fly   172 LILQYLAAI----SGKHSWIEQQIIEANPIMEAFGNAKTVRNDNSSRFGKYIEIRFTPQGAIQGA 232
            .||||...|    :..|: |.::::::||::||||||||:|||||||||||::|:|..:||..|.
Zfish   134 KILQYYTHICPTRNNTHT-IRERLLQSNPVLEAFGNAKTLRNDNSSRFGKYMDIQFDYKGAPIGG 197

  Fly   233 RIQQYLLEKSRIVFQSRDERNYHIFYCMLAGLSTAERERLKLQEQSPSQYHYLAQGGCFTLPGRG 297
            .|..|||||||:..|:..|||:||||.:|.|......:||.|.:.:|..||||.:|.|..:....
Zfish   198 HILNYLLEKSRVAHQNHGERNFHIFYQLLEGGEDLLLKRLGLDKTNPQHYHYLIKGNCPRVSSIS 262

  Fly   298 DAKDFADIRAAMKVLSFKPEEVWSILSLLAAILHLGNLRFTATEVANLATAEIDDTPNLQRVAQL 362
            |...:..:|.|:.::.|:.||:.:::.::|::|||||.:|...|...   ..|.....||.::||
Zfish   263 DKNGWKVVRNALTIIGFEDEEIQALMEIVASVLHLGNTQFGEDEEGE---THITTEAQLQFLSQL 324

  Fly   363 LGIPISALNAALTQRTIFVHGEHVTTSLSKEAAIEGRDAFVKSLYDGIFVRIVRRINETINKQVD 427
            ||:..|.|.||||.:.|...||.:.:.||.|.|:..||:|.|::|...|..:|:::|:::..:.:
Zfish   325 LGVDGSVLKAALTHKKIVAKGEEMISPLSLEQALSARDSFAKAIYGRAFTWLVQKLNQSLAFKDE 389

  Fly   428 QPMNS-----IGVLDIFGFENFDNNSFEQLCINYANENLQQFFVGHIFKMEQDEYQNEHINWQHI 487
            ...:|     ||:|||:|||.|.:|||||.||||.||.|||.|:....|.||:||:.|.:.|:.:
Zfish   390 IYYSSKCSSVIGLLDIYGFEVFQHNSFEQFCINYCNEKLQQLFIELTLKSEQEEYEAEGVVWERV 454

  Fly   488 EFQDNQQILDLIGMKPMNLMSLIDEES-KFPKGTDQTLLEKLHVQHGNRSIYVKGKTTQTSL--- 548
            |:.:|:.|.||:..|...:::::|||. :....:|.|.||||....|..:.::..|.....:   
Zfish   455 EYFNNKIICDLVEEKHKGIIAILDEECLRRGDASDITFLEKLEDTLGGHAHFITHKMANGKIRKA 519

  Fly   549 -----FGIRHYAGVVMYNPLGFLEKNRDSFSGDLRTLVQRSTNKYLVDIFPHEMPMDTAKKQPTL 608
                 |.:.||||.|.||..|||:||.|.....|:.::.:|||..:...|..:..|| .::..|.
Zfish   520 IGREEFRLVHYAGEVNYNVNGFLDKNNDLLYRHLKEVLCQSTNHIVSQCFHADELMD-QRRPETA 583

  Fly   609 CVKFRNSLDMLMRTLSQAHPYFIRCIKPNEYKEPKNFDKELCVRQLRYSGMMETARIRRAGYPIR 673
            ..:|:.||..||..|....|.::||||||:.|:|..||:.|...|::|.|:||..|:||||:..|
Zfish   584 ATQFKLSLAKLMDILMSKEPSYVRCIKPNDGKQPGRFDEVLVRHQVKYLGLMENLRVRRAGFAYR 648

  Fly   674 HAYRAFVERYRLLVPPVGPLEQCDCRKLARQICEVALPADSDRQYGKTKLFLR-------DEDDA 731
            .:|.||:|||:.|.|...|....:..:....:.:.......:.:.|::|:|:|       .||  
Zfish   649 RSYEAFLERYKSLCPDTWPNWHGNLPEGVATLVKHLNYKPEEFKLGRSKIFIRFPRTLFITED-- 711

  Fly   732 SLELQRSQLMLKSIVTIQRGIRRVLFRRYMKRYREAIITVQRYWRGRLQRRKYQVMRQGFHRLGA 796
            :||.|:..:    .||:|:..|....|....|.|.|:|.:|.:|||...|||.:      ||..|
Zfish   712 ALEAQKQTI----AVTLQKSWRGYRERANYHRIRHAVIVIQSWWRGVKGRRKAK------HRRQA 766

  Fly   797 CIAAQQLTTKFTM---VRCRTIKLQALSRGYL--VRKDFQKKLLERRKQNQLKKEELLKLAKMKE 856
            ....:.....|.:   .||..      :..:|  ||..|..|:.....::.|.|........:.|
Zfish   767 ADTIRNFIKGFILRNEPRCPD------NEYFLDHVRFSFLMKVKRNLPKSVLDKSWPKPPPSLTE 825

  Fly   857 AEELLR---LQQLKEQKEREQREQQEKRLQEEQRLKA 890
            |.|.:.   ::.|.....|  |.|.|.|.|.||::.|
Zfish   826 ASEHIHRICIRNLVNDYCR--RIQPEWRKQLEQKVVA 860

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo28B1NP_723294.1 MYSc_Myo7 81..726 CDD:276832 258/662 (39%)
IQ 765..785 CDD:197470 10/19 (53%)
Atrophin-1 <820..>946 CDD:460830 20/76 (26%)
MyTH4 1031..1239 CDD:470587
FERM1_F1_Myosin-VII 1243..1334 CDD:340612
B41 1248..1429 CDD:214604
PH-like 1454..1547 CDD:473070
MyTH4 1674..1819 CDD:214535
FERM2_F1_Myosin-VII 1825..1919 CDD:340613
B41 1827..2032 CDD:214604
FERM_C2_MyoVII 2028..2121 CDD:270020
myo1caNP_001418059.2 None
Blue background indicates that the domain is not in the aligned region.

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