DRSC/TRiP Functional Genomics Resources

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Protein Alignment Myo28B1 and myo3b

DIOPT Version :9

Sequence 1:NP_723294.1 Gene:Myo28B1 / 53515 FlyBaseID:FBgn0040299 Length:2122 Species:Drosophila melanogaster
Sequence 2:XP_001920287.4 Gene:myo3b / 564573 ZFINID:ZDB-GENE-070706-2 Length:1307 Species:Danio rerio


Alignment Length:1002 Identity:331/1002 - (33%)
Similarity:506/1002 - (50%) Gaps:173/1002 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 KAMHITSQEDVEDMITLGDLQEYTILRNLQNRYAKQLIYTYTGSMLVAINPYQILPIYTNREIQL 123
            |.:.|.|..| :|::.|..|.|.||:.:||.||....||||.|.:|:|:||:|.|.||:.:..:|
Zfish   348 KTLIIESCPD-DDLVNLELLDEETIIAHLQKRYQDLQIYTYVGDILIALNPFQNLSIYSPQFSKL 411

  Fly   124 YRNKSLAELPPHIFAISDNAFQRLQRLKENQCVVISGESGAGKTESTKLILQYLAAISGK--HSW 186
            |.....:..||||||.:|.|:|.:..|.::||::||||||||||||..||:|:|..: ||  :..
Zfish   412 YHGMKRSTNPPHIFATADAAYQSMVTLCKDQCIIISGESGAGKTESAHLIVQHLTFL-GKANNRT 475

  Fly   187 IEQQIIEANPIMEAFGNAKTVRNDNSSRFGKYIEIRFTPQGAIQGARIQQYLLEKSRIVFQSRDE 251
            :.::|::.||::||||||.|..||||||||||:|::|||.||:.||:|.:|||||||::.|:..|
Zfish   476 LREKILQVNPLVEAFGNACTAINDNSSRFGKYLEMKFTPTGAVMGAKISEYLLEKSRVIKQATGE 540

  Fly   252 RNYHIFYCMLAGLSTAER-ERLKLQEQSPSQYHYLAQGGCF--TLPGRGDAKDFADIRAAMKVLS 313
            :|:||||.:.|||...:. .:.||..::..:|.....|...  .:..:...:.|..|:...:::.
Zfish   541 KNFHIFYYIYAGLYHQDNLRKYKLPNKTAPRYIDCVNGKVMQDIISSKLYKEQFDAIQDCFRIIG 605

  Fly   314 FKPEEVWSILSLLAAILHLGNLRF-TATEVANLATAEIDDTPNLQRVAQLLGIPISALNAALTQR 377
            |..|||.|:..:|||||:.||:.| :|:.......:|:.::..|...|.||.|....|..|||..
Zfish   606 FTEEEVNSVYRILAAILNTGNIEFASASSQHQSDKSEVPNSEALDNAAALLSIGSEELQEALTSH 670

  Fly   378 TIFVHGEHVTTSLSKEAAIEGRDAFVKSLYDGIFVRIVRRINETINKQ-----VDQPMNSIGVLD 437
            .:...||.:..:.:.:.|.:.|||..|:||..:|..||.|||..:...     .:..|| :|:||
Zfish   671 CVVTRGETIIRTNTVDKATDVRDAMSKALYGRLFSWIVNRINALLQPDTNICAAESGMN-VGILD 734

  Fly   438 IFGFENFDNNSFEQLCINYANENLQQFFVGHIFKMEQDEYQNEHINWQHIEFQDNQQILDLIGMK 502
            |||||||..|||||||||.|||.:|.:|..|||.:||.|||:|.::...:|::||:.|||:...|
Zfish   735 IFGFENFKKNSFEQLCINIANEQIQFYFNQHIFALEQIEYQSEGVDVSLVEYEDNRPILDMFLQK 799

  Fly   503 PMNLMSLIDEESKFPKGTDQTLLEKLHVQHGNRSIYVKGKTTQTSLFGIRHYAGVVMYNPLGFLE 567
            ||.|:||:||||:||:.|||||::|......|:..::..:.  ...|||:||||.|:||..||||
Zfish   800 PMGLLSLLDEESRFPQATDQTLVDKFQDNLRNKYFWIPKRV--ELCFGIQHYAGQVLYNVSGFLE 862

  Fly   568 KNRDSFSGDLRTLVQRSTN-------------------------------------------KYL 589
            ||||:...|:..:::.|.|                                           |||
Zfish   863 KNRDTLPADIVVVLRTSENRLLQQLFSSPLTKTGNLATSRARVTAASRSLPPQLNSGRNKSPKYL 927

  Fly   590 VDIFPHEM---PMDTAK-KQPTLCVKFRNSLDMLMRTLSQAHPYFIRCIKPNEYKEPKNFDKELC 650
            :.:...||   |.:|.. ::.|:...||.||..|:..:....|:|:||||||:.::...|:||..
Zfish   928 LKVDTMEMMRHPEETTNMRRQTVASYFRYSLMDLLSKMVVGTPHFVRCIKPNDDRQALRFNKERV 992

  Fly   651 VRQLRYSGMMETARIRRAGYPIRHAYRAFVERYRLLV-----PPVGPLEQCDCRKLARQICEVAL 710
            :.||||:|::||..|||.||..|...:.||.||..|.     .|.|..|..           :.:
Zfish   993 MVQLRYTGILETVNIRRQGYSHRILIQEFVNRYYYLAFRAHQMPEGSKENA-----------III 1046

  Fly   711 PADSDRQY---GKTKLFLRDEDDASLELQRSQLMLKS----IVTIQR------GIRRVLFRRYMK 762
            ...:...|   |.||:||:     ...:::..|||:.    :|.:|.      |.||  :||..:
Zfish  1047 LQKAKLDYWVVGNTKVFLK-----YYHVEQLNLMLREVIARVVLMQAYTKGWLGARR--YRRERE 1104

  Fly   763 RYREAIITVQRYWRGRLQRRKYQVMRQGFHRLGACIAAQQLTTKFTMVRCRTIKLQALSRGYLVR 827
            :.|...:.:|..|||.:.|:..:::::...:                   ..:::|::.|||.||
Zfish  1105 KRRNGAVVIQSAWRGHVARQNLKLIKREREQ-------------------AAVQIQSVYRGYRVR 1150

  Fly   828 KDFQKK-------LLERRKQNQLKKEELL----------------KLAKMKEAEELLRLQ----- 864
            ||:::.       ..:|...|....|:::                |..|..::.|...|.     
Zfish  1151 KDYKQSRQWTGQPSSKRSSTNHSPDEKVVSVSADSGIGSSDASVPKTDKQSDSRERAPLSKQGPT 1215

  Fly   865 -QLKEQKEREQREQQEKRLQEEQRLKAEAAARNALAMAAVQQKRRTKPVK--------------- 913
             :|.:.:...:|.||.|.|...:    ::...|.|..:...|..:.||.|               
Zfish  1216 LKLHQHRSPRRRGQQPKLLNSPE----DSLYYNHLNRSLDYQGSKRKPRKLGQIKLLDGEDEYYQ 1276

  Fly   914 -----QEAPKAPTLQARNSLP--PPPT 933
                 :..|:...|...:..|  .|||
Zfish  1277 LLSTIEAVPEEDVLTGTSPNPTSTPPT 1303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo28B1NP_723294.1 MYSc 62..737 CDD:214580 281/740 (38%)
MYSc_Myo7 81..726 CDD:276832 273/710 (38%)
IQ 765..785 CDD:197470 6/19 (32%)
DUF4355 827..>887 CDD:290964 16/88 (18%)
MyTH4 1031..1239 CDD:295320
B41 1248..1429 CDD:214604
FERM_N 1248..>1288 CDD:286467
FERM_B-lobe 1342..1429 CDD:271216
PH-like 1454..1547 CDD:302622
MyTH4 1674..1819 CDD:214535
B41 1827..2032 CDD:214604
FERM_N 1829..>1877 CDD:286467
FERM_M 1936..2032 CDD:278785
FERM_C2_MyoVII 2028..2121 CDD:270020
myo3bXP_001920287.4 PKc_like 13..310 CDD:304357
S_TKc 36..309 CDD:214567
MYSc 358..1072 CDD:214580 278/733 (38%)
MYSc_Myo3 369..1065 CDD:276830 273/710 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4229
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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