DRSC/TRiP Functional Genomics Resources

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Protein Alignment Myo28B1 and Plekhh3

DIOPT Version :9

Sequence 1:NP_723294.1 Gene:Myo28B1 / 53515 FlyBaseID:FBgn0040299 Length:2122 Species:Drosophila melanogaster
Sequence 2:XP_006247425.1 Gene:Plekhh3 / 360634 RGDID:1304854 Length:871 Species:Rattus norvegicus


Alignment Length:658 Identity:145/658 - (22%)
Similarity:243/658 - (36%) Gaps:120/658 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  1542 DNLRQRSSYGVA---LDPVVEGDLEDCLVLNPGDLIEFEAGVTGA-QLMAGNAQDCYRGCVNGQ- 1601
            |:|.|.||.|..   |..:|...|  |.|..|    |.....||. .:.....:...|.|...| 
  Rat   204 DSLDQFSSSGKGARRLGSLVLTSL--CSVTGP----ERRPKETGLWSVTVSGRKHSIRLCSPRQA 262

  Fly  1602 ----WGQFLAGNVRVLATLTKPSE-KLQDILREGRFQEPPKPTPRANYSRRRQHNISQLAESHFR 1661
                ||..|...:...|.|..|:: .|:||...|       ..|.|.....|::.|.:...|...
  Rat   263 EAERWGVALREVIASKAPLETPTQLLLRDIQESG-------GDPEAVALIYRRNPILRHTSSALY 320

  Fly  1662 EPLDSDKAPLSKFSPEPLKAPLLKAVVKVPPLFQQALVMHHHILKYMGDIARSNLPVNTDLIFQP 1726
            .||  ...|....:|.|..|||.:..|:: .|..|||    ...:..|.:.:..|....||   |
  Rat   321 APL--LPLPYEVSAPGPGYAPLREEAVRL-FLALQAL----EGARRPGPLMQGVLQTCRDL---P 375

  Fly  1727 ALQHPLLCDELYCQLMKQLSDN------PSSE--SEKRGWDLLYLATGLVAPSVLVMRELIILLR 1783
            |||     |||:.||.||.|..      |:::  :..|.|.||...:....|...|...|:..|.
  Rat   376 ALQ-----DELFLQLAKQTSGPAGPPGLPATQDPAALRYWQLLTCMSCTFRPGGAVRGHLLGHLE 435

  Fly  1784 MRADALADACLKRLKRSL--AQGQ---RKKAPHLIEVEGIQQRCLHIYHKIYFPDDTVEAFEIES 1843
            ....||.|:.|....|.:  |.|:   |:..|.|.|:..:.:| ..:...::.|........|:|
  Rat   436 RTEQALPDSELAEYARFIRKALGRTRGRELVPSLAEISALSRR-QELLCTVHCPGAGACPVSIDS 499

  Fly  1844 HTRGAELIADIAQRLEL-KSPVGYSIFLKTGDRVYAMPEEEFVFDFITQLIYWLRQQRTIRSISD 1907
            ||...|:..::..||.| :|...::::.:.|.:..|:.....|.|.:|:......::..:....|
  Rat   500 HTTAGEVARELVGRLGLARSRNAFALYEQRGAQERALAGGTLVADVLTRFENLTSEEVGLEDSPD 564

  Fly  1908 GQYQLHFMRKLWLNNHPGEDLN---GDMIFSYPQELHKYLKGYYPIDCEQASRLAIL-VYSADHD 1968
            ..::|  ..:|....|| |.|:   .::.|.:.|.....|:|..|...:....||.| :.|...|
  Rat   565 SGWRL--CLRLHGPLHP-EGLSPEGHELPFLFEQAHALLLRGRPPPPDDTLRALAALRLQSLHRD 626

  Fly  1969 VSLQRLPEVLTRLIPEDLIPLQT-----------------------VAEWRQQILPKVHRDHLTE 2010
            .|.:....:|.||:|....|.:.                       :|:.|.:...::.....||
  Rat   627 FSPRGPLPLLDRLMPPPAPPREQPSRPARRPPPSAALLAGALWSPGLAKRRAERARRIGTGRSTE 691

  Fly  2011 DHAKI-----------------------------LFLQELSHFACFGSTFFVVKQQNDD---ALP 2043
            ..|::                             .:|...:....||:..:.|.:.:.:   ..|
  Rat   692 STAQVGGGGGGSTTAAVLGGWKRLRGMGQAEAMAAYLALAAQCPGFGAARYDVLELSTEPGGGAP 756

  Fly  2044 ETLLIAINSTGFHMLDPTTKEILRSYEYSQLGIWS-SGKNHFHIRFGNMIGASKLLCSTTQGYKM 2107
            :.|.:.:.:....:..|...|.:.|..|..:.... .|.:...:|    :|.|:||..:.|..::
  Rat   757 QKLCLGLGAKAMSLSRPGESEPIHSVSYGHVAACQLIGPHTLALR----VGDSQLLLQSPQVEEI 817

  Fly  2108 DDLLASYV 2115
            .:|:.:|:
  Rat   818 MELVNAYL 825

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo28B1NP_723294.1 MYSc 62..737 CDD:214580
MYSc_Myo7 81..726 CDD:276832
IQ 765..785 CDD:197470
DUF4355 827..>887 CDD:290964
MyTH4 1031..1239 CDD:295320
B41 1248..1429 CDD:214604
FERM_N 1248..>1288 CDD:286467
FERM_B-lobe 1342..1429 CDD:271216
PH-like 1454..1547 CDD:302622 2/4 (50%)
MyTH4 1674..1819 CDD:214535 46/157 (29%)
B41 1827..2032 CDD:214604 46/261 (18%)
FERM_N 1829..>1877 CDD:286467 11/48 (23%)
FERM_M 1936..2032 CDD:278785 23/148 (16%)
FERM_C2_MyoVII 2028..2121 CDD:270020 17/92 (18%)
Plekhh3XP_006247425.1 PH3_MyoX-like 161..285 CDD:270109 23/86 (27%)
PH 173..276 CDD:278594 21/77 (27%)
MyTH4 365..474 CDD:279165 35/116 (30%)
UBQ 486..>536 CDD:294102 11/49 (22%)
FERM_B-lobe 591..>630 CDD:298919 11/38 (29%)
PH-like 738..825 CDD:302622 16/90 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4229
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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