DRSC/TRiP Functional Genomics Resources

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Protein Alignment Myo28B1 and Myo16

DIOPT Version :9

Sequence 1:NP_723294.1 Gene:Myo28B1 / 53515 FlyBaseID:FBgn0040299 Length:2122 Species:Drosophila melanogaster
Sequence 2:XP_008769606.1 Gene:Myo16 / 192253 RGDID:621561 Length:1934 Species:Rattus norvegicus


Alignment Length:999 Identity:269/999 - (26%)
Similarity:451/999 - (45%) Gaps:209/999 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 MHITSQEDVEDMITLGDLQEYTILRNLQNRYAKQLIYTYTGSMLVAINPYQILPIYTNREIQLY- 124
            :.:|.....:|:.||.:|.:.::|..:|.|:....|:|:.|.:.:.:||::.||||:....|:| 
  Rat   417 VQLTPPAPSDDLATLSELNDSSLLYEIQKRFGNDQIHTFIGDIFLLVNPFKELPIYSTVVSQMYL 481

  Fly   125 -----RNKSLAELPPHIFAISDNAFQRLQRLKENQCVVISGESGAGKTESTKLILQYLAA-ISGK 183
                 |:.|   ||||:|:.::.||.||.:.:..|.:::|||.|:|||:::|.|:::|.: .|..
  Rat   482 SPTGQRSPS---LPPHLFSCAERAFHRLFQERRPQNIILSGERGSGKTQASKQIMKHLTSRASSS 543

  Fly   184 HSWIEQQIIEANPIMEAFGNAKTVRNDNSSRFGKYIEIRFTPQGA-IQGARIQQYLLEKSRIVFQ 247
            .:..:.:...|..|:||||:|||..|:.||...:|.|::|..:.. :.||||..|:|||.|:|.|
  Rat   544 CTMFDSRFKHAICILEAFGHAKTTLNNVSSCLIQYWELQFCQRRKHVTGARISTYMLEKPRLVAQ 608

  Fly   248 SRDERNYHIFYCMLAGLSTAERERLKLQEQSPSQYHYLAQG---GCFTLPGRGDAKDFADIRAAM 309
            ...:.::.||..::.|||..|:..|.|  .:...:.|::||   ...|.....:.:..||::.|:
  Rat   609 PPGQGSFLIFSWLMDGLSAEEKCGLHL--SNFCAHRYVSQGMREDVSTAERSLNKERLADLKHAL 671

  Fly   310 KVLSFKPEEVWSILSLLAAILHLGNLRFTATEVANLATAEIDDTPNLQRVAQLLGIPISALNAAL 374
            .|:.|...||.::.::|:||||:|:::|||...|:  :|.:.|...|::||.:|.:....|.:||
  Rat   672 NVIGFSALEVENLFAILSAILHIGDIQFTALTEAD--SAFVSDLQLLEQVADMLQVSTDELASAL 734

  Fly   375 TQRTIFVHGEHVTTSLSKEAAIEGRDAFVKSLYDGIFVRIVRRINETINKQVD----QPMNSIGV 435
            |....:..|:.:....:.:.|...||...||||..:|..::..:|..:..|.:    |.:: ||:
  Rat   735 TTDIQYFKGDVIIRRHTTQIAAFYRDLLAKSLYSRLFGFLINTVNCCLQSQDEYKSLQTLD-IGI 798

  Fly   436 LDIFGFENFDNNSFEQLCINYANENLQQFFVGHIFKMEQDEYQNEHINWQHIEFQDNQQ-ILDLI 499
            |||||||.|..|.|||||:|..||.:..:....:|..||.|...|.:..:......||. :||..
  Rat   799 LDIFGFEEFQKNEFEQLCVNLTNEKMHHYIQEVLFLQEQTECVQEGVAMETACSPGNQAGVLDFF 863

  Fly   500 GMKPMNLMSLIDEESKFPKGTDQTLLEKLH--------------VQHGNRSIYVKGKTTQTSLFG 550
            ..||....||:||||:.....:..|..||.              ::.||.::..||   |.:.|.
  Rat   864 FQKPSGFFSLLDEESQAIWSVEPNLPRKLQGLLESSNTNAVYSPMKDGNGNVAFKG---QGAAFT 925

  Fly   551 IRHYAGVVMYNPLGFLEKNRDSFSGDLRTLVQRSTNKYLVDIFPHEMP----------------- 598
            :.||||.|.|...|.:|:|:||.|.:|..:::.|.|..:..:|..::.                 
  Rat   926 VMHYAGRVTYEIRGAVERNKDSLSQNLLFVMKTSENVVISHLFQSKLSPTGSLISSYPSFKFGGH 990

  Fly   599 --------------------MDTAK--KQPTLCV---------------KFRNSLDMLMRTLSQA 626
                                ::.:|  |:...|.               :...||..:...|.:.
  Rat   991 KSSLLSKRIASSMVGVNKNYLELSKLLKKKGTCTFLQRLERGDPATTASQLTKSLADITAKLQKG 1055

  Fly   627 HPYFIRCIKPNEYKEPKNFDKELCVRQLRYSGMMETARIRRAGYPIRHAYRAFVERYR-----LL 686
            .|:||.|:|||..:.|..||......||:|.|::...|:.|.|||:|.::..|:.||.     ||
  Rat  1056 SPHFILCVKPNTSQLPGVFDHFYVSAQLQYLGVLGLVRLFRYGYPVRPSFEDFLSRYEPLASVLL 1120

  Fly   687 VPPVGPLEQCDCRKLARQICEVALPADSDRQYGKTKLFLR----DE-DDASLELQRSQLMLKSIV 746
            ....|...:..|| |..|.|::     ...|.|..|:||:    |: .|..|::||      .||
  Rat  1121 GEKKGQPAEERCR-LVLQRCKL-----QGWQMGVHKVFLKYWQVDQLGDLWLQMQR------KIV 1173

  Fly   747 TIQRGIRRVLFRRYMKRYREAIITVQRYWRGRLQRRKYQVMRQGFHRLGACIAAQQLTTKFTMVR 811
            |.|:.||..|.|:::                 |||..              |..|::|:      
  Rat  1174 TCQKVIRGFLARQHL-----------------LQRMS--------------IKQQEVTS------ 1201

  Fly   812 CRTIKLQALSRGYLVRKDFQKKLLERRKQNQLKKEELLKLAKMKE-AEELLRLQQLKEQKEREQR 875
                               .|..|:..:...||..:.|.:....: |.|..||:  ||......|
  Rat  1202 -------------------IKSFLQSTEDMALKTYDALVIQNASDIAREHDRLR--KEVHAAYHR 1245

  Fly   876 EQQEKRLQEEQRLKAEAAARNA--------LAMAAVQQKRRTKPVKQEAPKAPTLQARNSL---- 928
            .:||   :..:|.:.:...|:|        :|:.::.|     .:...:.::|:|.:..|:    
  Rat  1246 NRQE---EGTKRAEDQGGCRHAHSNSVPVPMAVDSLAQ-----ALAGPSSRSPSLHSVFSMDDST 1302

  Fly   929 --------PPP-----PTTLIVAA 939
                    |||     |.|.:.|:
  Rat  1303 GLPSPRKQPPPKPKRDPNTRLSAS 1326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo28B1NP_723294.1 MYSc 62..737 CDD:214580 225/768 (29%)
MYSc_Myo7 81..726 CDD:276832 216/733 (29%)
IQ 765..785 CDD:197470 3/19 (16%)
DUF4355 827..>887 CDD:290964 14/60 (23%)
MyTH4 1031..1239 CDD:295320
B41 1248..1429 CDD:214604
FERM_N 1248..>1288 CDD:286467
FERM_B-lobe 1342..1429 CDD:271216
PH-like 1454..1547 CDD:302622
MyTH4 1674..1819 CDD:214535
B41 1827..2032 CDD:214604
FERM_N 1829..>1877 CDD:286467
FERM_M 1936..2032 CDD:278785
FERM_C2_MyoVII 2028..2121 CDD:270020
Myo16XP_008769606.1 ANKYR 86..332 CDD:223738
ANK 89..190 CDD:238125
ANK repeat 114..145 CDD:293786
ANK 142..297 CDD:238125
ANK repeat 147..178 CDD:293786
ANK repeat 180..210 CDD:293786
ANK repeat 243..274 CDD:293786
ANK repeat 276..307 CDD:293786
MYSc 425..1161 CDD:214580 222/752 (30%)
MYSc_Myo16 437..1154 CDD:276844 216/733 (29%)
NYAP_N 1246..1603 CDD:292079 16/89 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4229
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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