DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SP1029 and ltah-1.2

DIOPT Version :9

Sequence 1:NP_001263065.1 Gene:SP1029 / 53473 FlyBaseID:FBgn0263236 Length:932 Species:Drosophila melanogaster
Sequence 2:NP_500385.1 Gene:ltah-1.2 / 177123 WormBaseID:WBGene00022610 Length:625 Species:Caenorhabditis elegans


Alignment Length:580 Identity:122/580 - (21%)
Similarity:220/580 - (37%) Gaps:143/580 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 LTIDESQITLRQIGGEGKKENCVSSTAVNPSHDFYILNTCQELLAGNTYELYMP---FAADLNRQ 144
            |.:|...:::|.:...|  .:|....|.| .:.|:          |:...:|:|   ..|....|
 Worm    57 LVLDVRDLSIRSVSING--VDCDFRIAPN-VYTFF----------GSKMSVYLPPQFQKAGTILQ 108

  Fly   145 LEGYYRSSYKDPVANLTKWIS------------VTQFEPASARLAFPCFDEPDFKAPFVVTLGYH 197
            :...|.:|   |.|...:|:.            .:|.:...||...||.|.|..|:.:...:...
 Worm   109 VTVAYGTS---PDATALQWMKKEQTADKRMPYLFSQCQAIHARSIVPCMDTPSVKSTYEAEVTVP 170

  Fly   198 KKYTAISNMPEKETKPHETLADYIWCEFQESVPMSTYLVAYSV-----NDFSHKPSTLPNSALFR 257
            ...|.:.:...:.:|..:....:.   :::.|.:.:||:|..|     .|.|.:.:         
 Worm   171 TGMTCLMSAIGQGSKGDDDTTTFF---YKQPVAIPSYLIAIVVGCLEKRDISDRCA--------- 223

  Fly   258 TWARPNAIDQCDYAAQFGPKVLQYYEQFFGIKFPLPKIDQIAV-PDFSAGAMENWGLVTYREIAL 321
            .||.|:.:|:..:.......:|...|:..| |:...:.|.:.: |.|..|.||| ..:|:....|
 Worm   224 VWAEPSVVDKAHWEFAETEDILASAEEIAG-KYIWGRYDMVCLPPSFPFGGMEN-PCLTFLTPTL 286

  Fly   322 LYSAAHSSLADKQRVASVVAHELAHQWFGNLVTMKWWTDLWLNEGFATYV-ASLGVENINPEWRS 385
                    :|..:.:.||:|||:||.|.|||||...|...||||||..:: ..:....::.::|.
 Worm   287 --------IAGDRSLVSVIAHEIAHSWSGNLVTNSSWEHFWLNEGFTMFIERKICGRLVSEDYRQ 343

  Fly   386 -MEQESLSNLLTIFRRDALESSHPISRPIQMVSEISE--SFDQISYQKGSTVLRMMHLFL-GEES 446
             |.....:|.|.....:....:|..::.||..:.:..  :|..:.|:|||.:|..:...| |.|.
 Worm   344 FMAFNGWTNSLIPAVYEQFTPTHQFTKLIQDHTNVDPDVAFSCVPYEKGSALLFYLEQKLGGSEI 408

  Fly   447 FRSGLQAYLQKFSYKNAEQDNLWESLTQAAHKYRSLPKSYDIKSIMDS-----WTLQTGYPVINV 506
            |.:.|:.||:.|:::..:.   |:   ...|.|:...   |.|.::|:     |....|.|.   
 Worm   409 FEAYLKDYLKTFAHQAIDS---WQ---WKDHLYKYFA---DQKEVLDTVNFDLWFNGVGMPP--- 461

  Fly   507 TRDYAARTAKLNQERYLLNTQVARAYRGGCWWVPLSYTTQAVQDFNNTAPKAWMECGKNGESLPK 571
                       .:..|                      .|::.:......|.|:...::      
 Worm   462 -----------EKPNY----------------------GQSMVEACEVLLKKWLAADES------ 487

  Fly   572 TIQDLPGPDQWVIFNTQ----------------------LSTLYKVNYDAQNWKLLIETL 609
            |:.|:...|.:.:...|                      |:.|||:| |:||.:||:..|
 Worm   488 TVGDITSEDYYAMQPLQQIELLSQLWQHDPPIEHYKLDALNKLYKLN-DSQNSELLLNWL 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SP1029NP_001263065.1 Peptidase_M1 33..431 CDD:279741 82/372 (22%)
M1_APN_2 43..502 CDD:189008 102/449 (23%)
ERAP1_C 583..908 CDD:288671 12/49 (24%)
ltah-1.2NP_500385.1 M1_LTA4H 12..455 CDD:341062 101/444 (23%)
Leuk-A4-hydro_C 500..614 CDD:378127 12/48 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.