DRSC/TRiP Functional Genomics Resources

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Protein Alignment Aplip1 and Fam43b

DIOPT Version :9

Sequence 1:NP_728573.1 Gene:Aplip1 / 53472 FlyBaseID:FBgn0040281 Length:490 Species:Drosophila melanogaster
Sequence 2:XP_006239356.1 Gene:Fam43b / 313650 RGDID:1560959 Length:330 Species:Rattus norvegicus


Alignment Length:169 Identity:44/169 - (26%)
Similarity:67/169 - (39%) Gaps:25/169 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   315 RTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLGYLGSVETLAHKGTGVVCQAVRKIVGEYGN 379
            |.||  :|.|. ...::.|:.|||        |.:.|||:..||..||.|....||.:|....| 
  Rat    51 RLGR--VFRSR-RQKVELNKEDPT--------YTVWYLGNAVTLHAKGDGCTDDAVGRIWARCG- 103

  Fly   380 SPTGQTCI-LEVSDQGLRMVDRSGPNQNKKDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHP 443
             |.|.|.: |.:...|:||......:.....::|.  :.|.|..:::||...|..|...::.:|.
  Rat   104 -PGGGTKMKLTLGPHGIRMQPSERGSGGSGGRRPA--HAYLLPRITYCAADGRHPRVFTWVYRHQ 165

  Fly   444 TVQR---FACH------VFKGSESTRPVAEAVGRAFQRF 473
            ...:   ..||      ..|.....|.:.:....||..|
  Rat   166 ARHKAVVLRCHAVLLARAHKARSLARLLHQTALAAFSDF 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Aplip1NP_728573.1 SH3_JIP1_like 275..329 CDD:212735 5/13 (38%)
PTB_JIP 343..490 CDD:269923 35/141 (25%)
Fam43bXP_006239356.1 PH-like 71..262 CDD:418428 36/146 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334783
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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