DRSC/TRiP Functional Genomics Resources

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Protein Alignment Aplip1 and Numbl

DIOPT Version :9

Sequence 1:NP_728573.1 Gene:Aplip1 / 53472 FlyBaseID:FBgn0040281 Length:490 Species:Drosophila melanogaster
Sequence 2:XP_006228627.1 Gene:Numbl / 292732 RGDID:1307579 Length:641 Species:Rattus norvegicus


Alignment Length:121 Identity:39/121 - (32%)
Similarity:56/121 - (46%) Gaps:13/121 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   351 YLGSVETLAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDRSGPNQNKKDKKPCID 415
            |||.||....:|..|...||:|:......|...   :|.||..|||:||       .|.|...:|
  Rat   111 YLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKS---VLWVSADGLRVVD-------DKTKDLLVD 165

  Fly   416 YFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFACHVFKG-SESTRPVAEAVGRAF 470
              .:::.|||||......:...:|.:..|.:|:.||.|.. .:|...::.|||.||
  Rat   166 --QTIEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCAF 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Aplip1NP_728573.1 SH3_JIP1_like 275..329 CDD:212735
PTB_JIP 343..490 CDD:269923 39/121 (32%)
NumblXP_006228627.1 PTB_Numb 91..225 CDD:241298 39/121 (32%)
NumbF 314..398 CDD:283874
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334782
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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