DRSC/TRiP Functional Genomics Resources

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Protein Alignment Aplip1 and Fam43a

DIOPT Version :9

Sequence 1:NP_728573.1 Gene:Aplip1 / 53472 FlyBaseID:FBgn0040281 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_001034091.1 Gene:Fam43a / 288031 RGDID:1304790 Length:430 Species:Rattus norvegicus


Alignment Length:183 Identity:43/183 - (23%)
Similarity:65/183 - (35%) Gaps:48/183 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   318 RQGIFPSAYAVDLDYNEF-------------------------------DPTVQLVKKERYLLGY 351
            ||...|..|||.|.|:..                               |||        |.:.|
  Rat    18 RQASKPKGYAVSLHYSALSSLARACPEGALSRVGSMFRSKRKKLHITSEDPT--------YTVLY 74

  Fly   352 LGSVETLAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDRSGPNQNKKDKKPCIDY 416
            ||:..|:..:|.|....||.||..:......|....|.||.||:|||..    :.:..::|  .:
  Rat    75 LGNATTIQARGDGCTDLAVGKIWSKSEAGRQGTKMKLTVSAQGIRMVHA----EERALRRP--GH 133

  Fly   417 FYSLKNVSFCAFHPRDHRFIGFITKHPTVQR---FACHVFKGSESTRPVAEAV 466
            .|.|..|::|....|..:...::.:|....:   ..||....|:..:..|.|:
  Rat   134 LYLLHRVTYCVADARLPKVFAWVYRHELKHKAVMLRCHAVLVSKPEKAQAMAL 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Aplip1NP_728573.1 SH3_JIP1_like 275..329 CDD:212735 5/10 (50%)
PTB_JIP 343..490 CDD:269923 32/127 (25%)
Fam43aNP_001034091.1 PID_2 69..256 CDD:258856 33/132 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334789
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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