Protein Alignment HGTX and Cdx2

DIOPT Version :9

• Sequence 1: NP_001368954.1
• Gene: HGTX / 53446
• FlyBaseID: FBgn0040318
• Length: 587
• Species: Drosophila melanogaster
• Sequence 2: NP_076453.1
• Gene: Cdx2 / 66019
• RGDID: 621234
• Length: 310
• Species: Rattus norvegicus
• Alignment Length: 377
• Identity: 76/377 - (20%)
• Similarity: 122/377 - (32%)
• Gaps: 150/377 - (39%)

  Fly   169 HGGGLKDSDSPSTTPPPASSRLHSDSSPSPRYEHNSSPGVDSAKSYALSQRSSGAEDPCQTSESA 233
            |.|||..:.....:|              |:|.......|.:|.:.|.:..|:.:..|...:...
  Rat    20 HSGGLNLAPQNFVSP--------------PQYPDYGGYHVAAAAAAAANLDSAQSPGPSWPTAYG 70

  Fly   234 SPPPQGQNDYSPENLSSQRAKFQHHHGVNPLALHNANHAGNPGCHNNNNHMDHKLPLSFLGPPLA 298
            :|..:..|.|:|...::..|.   .||:|
  Rat    71 APLREDWNGYAPGGAAAANAV---AHGLN------------------------------------ 96

  Fly   299 ALHSMTTEMKGQGVGGSSASANGLS-----YSHSPNSHLISDRGSGGSSSSSSTTTTNTNSQGAP 358
                          |||.|:|.|.|     ::|....|......:..|.:|....|.|      |
  Rat    97 --------------GGSPAAAMGYSSPAEYHAHHHPHHHPHHPAAAPSCASGLLQTLN------P 141

  Fly   359 NPHGIDTILSKPPPVTSAGLSALTGAGIPRFSIAAAAAGMAQYLSQ----SQGAPLKTHAGHIVD 419
            .|         |.|..:|....|:.:|..|        .:.:::.:    |.|:.:||
  Rat   142 GP---------PGPAATAAAEQLSPSGQRR--------NLCEWMRKPAQPSLGSQVKT------- 182

  Fly   420 RTHLYWPGLQGLVANPIAWRERLSNTMSANLSQSHQHHPSNDKDGKKKHTRPTFSGQQIFALEKT 484
            ||                                           |.|: |..::..|...|||.
  Rat   183 RT-------------------------------------------KDKY-RVVYTDHQRLELEKE 203

  Fly   485 FEQTKYLAGPERAKLAYALGMSESQVKVWFQNRRTKWRKRHAAEMATAKRKQ 536
            |..::|:....:|:||..||:||.|||:||||||.|.||.:..::...:::|
  Rat   204 FHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQ 255

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HGTX	NP_001368954.1	ROM1	179..>388	CDD:227709	36/213 (17%)
		Homeobox	469..523	CDD:395001	24/53 (45%)
Cdx2	NP_076453.1	Caudal_act	13..170	CDD:282574	41/239 (17%)
		Homeobox	189..241	CDD:278475	24/51 (47%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0850
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X14
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.900