DRSC/TRiP Functional Genomics Resources

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Protein Alignment HGTX and hoxc6b

DIOPT Version :10

Sequence 1:NP_001368954.1 Gene:HGTX / 53446 FlyBaseID:FBgn0040318 Length:587 Species:Drosophila melanogaster
Sequence 2:XP_073772180.1 Gene:hoxc6b / 58045 ZFINID:ZDB-GENE-000822-1 Length:228 Species:Danio rerio


Alignment Length:157 Identity:41/157 - (26%)
Similarity:63/157 - (40%) Gaps:32/157 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   400 QYLSQSQGAPLKTHAGHIVDRTHLYWPGLQGLVANP------IAWRERLSNTMSANLSQSHQHHP 458
            |...|:||:..:.:|..            ||....|      ..|.:|:::            |.
Zfish    88 QGFGQTQGSLTQDYASD------------QGKTMEPKGSVQIYPWMQRMNS------------HS 128

  Fly   459 SNDKDGKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMSESQVKVWFQNRRTKWRK 523
            .......::..|..:|..|...|||.|...:||....|.::|..|.:||.|:|:||||||.||:|
Zfish   129 GVGYGSDRRRGRQIYSRYQTLELEKEFHYNRYLTRRRRIEIANTLCLSERQIKIWFQNRRMKWKK 193

  Fly   524 RHAAEMATAKRKQDDMGGDNDGDCSET 550
            .  :.:.:.......:|...|.|..||
Zfish   194 E--SNLTSILNDNGSVGAGQDTDKEET 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HGTXNP_001368954.1 ROM1 179..>388 CDD:227709
Homeodomain 465..523 CDD:459649 24/57 (42%)
hoxc6bXP_073772180.1 None
Blue background indicates that the domain is not in the aligned region.

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