DRSC/TRiP Functional Genomics Resources

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Protein Alignment HGTX and Tlx3

DIOPT Version :9

Sequence 1:NP_001368954.1 Gene:HGTX / 53446 FlyBaseID:FBgn0040318 Length:587 Species:Drosophila melanogaster
Sequence 2:XP_573065.4 Gene:Tlx3 / 497881 RGDID:1564190 Length:291 Species:Rattus norvegicus


Alignment Length:286 Identity:91/286 - (31%)
Similarity:116/286 - (40%) Gaps:88/286 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   354 SQGAPNPH-----GIDTIL------SKPPPVTSAGLSAL-------TGAGIPRFSIAAAAAGMAQ 400
            |...|:||     |||.||      |.|.|....|.|.|       .||..|  |:.|:.||:  
  Rat     6 SAQTPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRPGAAYP--SLPASFAGL-- 66

  Fly   401 YLSQSQGAPLKTHAGHIVD---------RTHLYWPGLQGLVANPI-------------------- 436
                  |||.:....:.|:         |...:.| |.|.|..|:                    
  Rat    67 ------GAPFEDAGSYSVNLSLAPAGVIRVPAHRP-LPGAVPPPLPSALPAMPSVPTVSSLGGLN 124

  Fly   437 -AWRERLSN------TMSANLS----QSHQHHP-SNDKDGKKKHTRPTFSGQQIFALEKTFEQTK 489
             .|.|....      |.:|.|:    .....|| .|....|:|..|.:||..||..|||.|.:.|
  Rat   125 FPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQK 189

  Fly   490 YLAGPERAKLAYALGMSESQVKVWFQNRRTKWRKRHAAEMATAKRKQDDMGGDNDGDCSETM--- 551
            |||..|||.||.:|.|:::|||.|||||||||| |..||...|:|:|          .|..|   
  Rat   190 YLASAERAALAKSLKMTDAQVKTWFQNRRTKWR-RQTAEEREAERQQ----------ASRLMLQL 243

  Fly   552 --DSDNESLDMGESPAQNKRCRSNSS 575
              |:..:||:  :|...:..|..|||
  Rat   244 QHDAFQKSLN--DSIQPDPLCLHNSS 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HGTXNP_001368954.1 ROM1 179..>388 CDD:227709 17/51 (33%)
Homeobox 469..523 CDD:395001 32/53 (60%)
Tlx3XP_573065.4 Homeobox 169..223 CDD:395001 33/54 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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