DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HGTX and slou

DIOPT Version :9

Sequence 1:NP_001368954.1 Gene:HGTX / 53446 FlyBaseID:FBgn0040318 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster


Alignment Length:590 Identity:132/590 - (22%)
Similarity:209/590 - (35%) Gaps:182/590 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SITPAGGSSNP--SPTPPPPDAKVAAKQLAQSFQ-LSANSAFNLALPPAF---YRAPPQQHPECL 66
            |:|....:||.  |.:||.....|:....||..: |..|:..:||.|...   :.|..||||..|
  Fly   125 SLTNHNANSNTRRSQSPPASVGSVSFSSPAQQRKLLELNAVRHLARPEPLQHPHAALLQQHPHLL 189

  Fly    67 DYGHEAPEMDLINPYMRHHSFAAAAQGSPPSAAQRHHLAAAMSNGFADVHAHAMAAADYQQQLAD 131
            .           ||     .|.||||........:||...|..:.....|.|...          
  Fly   190 Q-----------NP-----QFLAAAQQHMHHHQHQHHQHPAHPHSHQHPHPHPHP---------- 228

  Fly   132 YHSAAAAAAVYANNNNNNNNNSSNNNNSSPLMLLKAAHGGGLKDSDSPSTTP--PPASSRLHSDS 194
             |.....:||:       :..:.::::::|               .||:|:|  ||.|..:|||.
  Fly   229 -HPHPHPSAVF-------HLRAPSSSSTAP---------------PSPATSPLSPPTSPAMHSDQ 270

  Fly   195 SPSPRYEHNSSPGVDSAKSYALSQRSSGAEDPCQTSESASPPPQGQNDYSPENLSSQRAKFQHHH 259
            ..||...                        |.|....:|.|||.|...:|.::..:|.|.    
  Fly   271 QMSPPIA------------------------PPQNPPHSSQPPQQQQVAAPSDMDLERIKL---- 307

  Fly   260 GVNPLALHNANHAGNPGCHNNNNHMDH---KLPLSFLGPPLA---ALHSMTTEMKGQGVGGSSAS 318
             |..:|......:......:.:|.:.:   .:..|..|.|..   :.:....::.|.....::|:
  Fly   308 -VAAVAARTTQASSTSALASASNSVSNASISISNSSSGSPSGRDLSDYGFRIQLGGLAAAAAAAA 371

  Fly   319 AN-----GLSYSHSPNSHLISDRG-----SGGSSSSSST----TTTNTNSQGAPNPHGIDTILSK 369
            |.     ..:|:.|..|..::..|     :.||.|:.|.    .|.:.||..|.||....|..|.
  Fly   372 ATSRQIAAATYARSDTSEELNVDGNDEDSNDGSHSTPSVCPVDLTRSVNSSAAANPSSASTSASS 436

  Fly   370 PPPVTSAGLSALTGAGIPRFSIAAAAAGMAQYLSQSQGAPLKTHAGHIVDRTHLYWPGL-QGLVA 433
            .....:..|:         ||:.                       :|:|........| .|...
  Fly   437 DRDAATKRLA---------FSVE-----------------------NILDPNKFTGNKLPSGPFG 469

  Fly   434 NPIAW--------RERLSNTMSANLSQ---------------SHQHHPSNDKDGKK--------- 466
            :|..|        :|||.:..|.::|.               |....||::.|.||         
  Fly   470 HPRQWSYERDEEMQERLDDDQSEDMSAQDLNDMDQDDMCDDGSDIDDPSSETDSKKGGSRNGDGK 534

  Fly   467 -----------KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMSESQVKVWFQNRRTK 520
                       :..|..|:.:|:.:||..|:.|:||:..||..||.:|.::|:|||:||||||||
  Fly   535 SGGGGGGGSKPRRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 599

  Fly   521 WRKRH 525
            |:|::
  Fly   600 WKKQN 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HGTXNP_001368954.1 ROM1 179..>388 CDD:227709 47/230 (20%)
Homeobox 469..523 CDD:395001 27/53 (51%)
slouNP_001262808.1 Homeobox 549..601 CDD:278475 26/51 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45442254
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D858478at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24340
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.950

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