DRSC/TRiP Functional Genomics Resources

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Protein Alignment HGTX and cad

DIOPT Version :9

Sequence 1:NP_001368954.1 Gene:HGTX / 53446 FlyBaseID:FBgn0040318 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster


Alignment Length:501 Identity:109/501 - (21%)
Similarity:170/501 - (33%) Gaps:163/501 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 PYMRHHSFA----AAAQGSPPSAAQRHHLAAAMSNGFADV---HAHAMAAADYQQQLADYH---- 133
            ||.:.||.|    |:|.|.|.:....:|..........||   ||...|||.:|.....:|    
  Fly    10 PYTQKHSAANLAYASAAGQPWNWTPNYHHTPPNHQFLGDVDSSHAAHHAAAAHQMYYNSHHMFHS 74

  Fly   134 SAAAAAAVYANNNNNNNNNSSNNNNSSPLMLLKAAH------GGGLKDSDSPSTTPPPASSRLHS 192
            :|||:|..:.:..::..:|...|..:|...|::..|      ......|.|.|:...|.:.:|: 
  Fly    75 AAAASAGEWHSPASSTADNFVQNVPTSAHQLMQQHHHHHAHASSSSASSGSSSSGGAPGAPQLN- 138

  Fly   193 DSSPSPRYEHNSSPGVDSAKSYALSQRSSGAEDPCQTSESASPPPQGQNDYSPENLSSQRAKFQH 257
                    |.|||.||..|..      ..|..........::||                     
  Fly   139 --------ETNSSIGVGGAGG------GGGVGGATDGGPGSAPP--------------------- 168

  Fly   258 HHGVNPLALHNANHAGNPGCHNNNNHMDHKLPLSFLGPPLAALHSMTTEMKGQGVGGSSASANGL 322
                                 |:..|:...||    .||:.             |.||..|:.|.
  Fly   169 ---------------------NHQQHIAEGLP----SPPIT-------------VSGSEISSPGA 195

  Fly   323 SYS-HSPNSHL------ISDRGSGGSSSSSSTTTTNTNSQGAPNPHGIDTILSKPPPVTSAGLSA 380
            ..| .||:.||      :::..:..:::::|.:|.|.|:......:...|..||||         
  Fly   196 PTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKPP--------- 251

  Fly   381 LTGAGIPRFSIAAAAAGMAQYLSQSQGAPLKTHAGHIVDRTHLYWPGLQGLVANPIAWRERLSNT 445
                                                     :..|.......|.|   :..||: 
  Fly   252 -----------------------------------------YFDWMKKPAYPAQP---QPDLSS- 271

  Fly   446 MSANLSQSHQHHPSNDKDGKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMSESQV 510
             |.||........::.|...|...|..::..|...|||.:..::|:....:::||..|.:||.||
  Fly   272 -SPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQV 335

  Fly   511 KVWFQNRRTKWRKRHAAEMATAKRKQDD--MG-GDNDGDCSETMDS 553
            |:||||||.|.||::       |:..|.  || |....|.|:.:|:
  Fly   336 KIWFQNRRAKERKQN-------KKGSDPNVMGVGVQHADYSQLLDA 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HGTXNP_001368954.1 ROM1 179..>388 CDD:227709 38/215 (18%)
Homeobox 469..523 CDD:395001 21/53 (40%)
cadNP_001260641.1 Homeobox 295..347 CDD:278475 21/51 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 1 0.900 - - E1_KOG0850
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D858478at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
54.820

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