DRSC/TRiP Functional Genomics Resources

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Protein Alignment HGTX and msx3

DIOPT Version :9

Sequence 1:NP_001368954.1 Gene:HGTX / 53446 FlyBaseID:FBgn0040318 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_571347.2 Gene:msx3 / 30526 ZFINID:ZDB-GENE-980526-306 Length:273 Species:Danio rerio


Alignment Length:361 Identity:75/361 - (20%)
Similarity:122/361 - (33%) Gaps:157/361 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 PASSRLHSDSSPSPRYEHNSSPGVDSAKSYALSQRSSGAEDPCQTSESA----------SPPPQG 239
            |.||.::|:...|              :...|.:|.|..::..|:::.|          |.|   
Zfish     3 PLSSMMNSEGPLS--------------QEGKLQERKSADKEDAQSNDKAAVKGCKGKALSLP--- 50

  Fly   240 QNDYSPENLSSQRAKFQHHHGVNPLALHNANHAG--NPGCHNNNNHMDHKLPLSFLGPPLAALHS 302
               :|.|:|.|.|...:        .|:.::.||  :|     .:..|.:|.||    |:|....
Zfish    51 ---FSVESLISDRTSSR--------TLYTSSEAGIISP-----TSGADERLKLS----PMALYAD 95

  Fly   303 MTTEMKGQGVGGSSASANGLSYSHSPNSHLISDRGSGGSSSSSSTTTTNTNSQGAPNPHGIDTIL 367
            ....::         |.:.||.....:...:||:|..|...::|.|        :|..|      
Zfish    96 RKIPVE---------SVSNLSDCKRGDMEELSDKGQSGWFQTTSYT--------SPPRH------ 137

  Fly   368 SKPPPVTSAGLSALTGAGIPRFSIAAAAAGMAQYLSQSQGAPLKTHAGHIVDRTHLYWPGLQGLV 432
            |.|||.|                                   |:.|                   
Zfish   138 SSPPPCT-----------------------------------LRKH------------------- 148

  Fly   433 ANPIAWRERLSNTMSANLSQSHQHHPSNDKDGKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERA 497
                                         |:.:|..|  .|:..|:.|||:.|.|.:||:..|||
Zfish   149 -----------------------------KNNRKPRT--PFTTSQLLALERKFRQKQYLSIAERA 182

  Fly   498 KLAYALGMSESQVKVWFQNRRTKWRKRHAAEMATAK 533
            :.:.:|.::|:|||:||||||.|.::...||:...|
Zfish   183 EFSNSLNLTETQVKIWFQNRRAKAKRLQEAELEKLK 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HGTXNP_001368954.1 ROM1 179..>388 CDD:227709 43/214 (20%)
Homeobox 469..523 CDD:395001 25/53 (47%)
msx3NP_571347.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..159 18/143 (13%)
Homeobox 154..207 CDD:278475 25/54 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0850
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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