DRSC/TRiP Functional Genomics Resources

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Protein Alignment HGTX and Nkx2-1

DIOPT Version :10

Sequence 1:NP_001368954.1 Gene:HGTX / 53446 FlyBaseID:FBgn0040318 Length:587 Species:Drosophila melanogaster
Sequence 2:XP_006240178.1 Gene:Nkx2-1 / 25628 RGDID:3866 Length:423 Species:Rattus norvegicus


Alignment Length:415 Identity:104/415 - (25%)
Similarity:151/415 - (36%) Gaps:111/415 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 PPASSRLHSDSSPSPRYEHNSSP-GVDSAKSYALSQRSSGAEDPCQTSESASPPPQGQND-YSPE 246
            ||:   |||......|    |:| .|...:| |||:|...:..|..|:      |...:| .||.
  Rat    21 PPS---LHSSQLRRTR----STPLRVHPTRS-ALSRRRIMSMSPKHTT------PFSVSDILSPL 71

  Fly   247 NLSSQRAKFQHHHGVNPLALHNANHAGNPGCHNNNNHMDHKLPLSFLGPPLAALHSMTTEMKGQG 311
            ..|.::...:......|||.:....|..|......:.:.|.      |...||.|     |...|
  Rat    72 EESYKKVGMEGGGLGAPLAAYRQGQAAPPAAAMQQHAVGHH------GAVTAAYH-----MTAAG 125

  Fly   312 VGGSSASANGLSYSHSPNSHLISDRGSGGSSSSSSTTTTNTNSQGAPNPHGIDTILSKPPPVTSA 376
            |...|.||.| .|.   |.:|      |..|.......|..||...|..:|     :.|.     
  Rat   126 VPQLSHSAVG-GYC---NGNL------GNVSELPPYQDTMRNSASGPGWYG-----ANPD----- 170

  Fly   377 GLSALTGAGIPRFSIAAAAAGMAQYLSQSQGAPLKTHAGHIVDRTHLYWPGLQGLVANPIAWRER 441
                      |||...:...|.|..::.|                     |:.||.:        
  Rat   171 ----------PRFPAISRFMGPASGMNMS---------------------GMGGLGS-------- 196

  Fly   442 LSNTMSANLSQSHQHHPSNDKDGKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMS 506
                 ..::|::....||    ..::..|..||..|::.||:.|:|.|||:.|||..||..:.::
  Rat   197 -----LGDVSKNMAPLPS----APRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLT 252

  Fly   507 ESQVKVWFQNRRTKWRKRHAAEMATAKRKQDDMGGDNDG----DCSETMDSDNESLDMGESPA-- 565
            .:|||:||||.|.| .||.|.:.|..::.|.|.||...|    .|.:...:..:|......|.  
  Rat   253 PTQVKIWFQNHRYK-MKRQAKDKAAQQQLQQDSGGGGGGGGGAGCPQQQQAQQQSPRRVAVPVLV 316

  Fly   566 -QNKRCRSNS--------SGSSQQQ 581
             ..|.|::.:        .|.:|||
  Rat   317 KDGKPCQAGAPAPGAASLQGHAQQQ 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HGTXNP_001368954.1 ROM1 179..>388 CDD:227709 49/205 (24%)
Homeodomain 465..523 CDD:459649 25/57 (44%)
Nkx2-1XP_006240178.1 Homeodomain 213..269 CDD:459649 25/56 (45%)

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