DRSC/TRiP Functional Genomics Resources

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Protein Alignment HGTX and Nkx6-1

DIOPT Version :9

Sequence 1:NP_001368954.1 Gene:HGTX / 53446 FlyBaseID:FBgn0040318 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_659204.1 Gene:Nkx6-1 / 18096 MGIID:1206039 Length:365 Species:Mus musculus


Alignment Length:373 Identity:151/373 - (40%)
Similarity:187/373 - (50%) Gaps:119/373 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   291 SFL--GPPLAALHSMTTEMK-----------GQGVGGSSASANGLSY------SHSPNSHLISDR 336
            :||  .||||||||| .|||           ..|...||:|::..|.      ||:|..  :...
Mouse    14 AFLLSSPPLAALHSM-AEMKTPLYPAAYPPLPTGPPSSSSSSSSSSSPSPPLGSHNPGG--LKPP 75

  Fly   337 GSGGSSSSSSTTTTNTNSQGAPNPHGIDTILSKPP-PV------------------------TSA 376
            .:||.||..|.    .....|..||||:.|||:|. ||                        |||
Mouse    76 AAGGLSSLGSP----PQQLSAATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASATSA 136

  Fly   377 GLSALTG---------------AGIPRFS---------------IAAAAAGMAQYLSQSQGAPLK 411
            ..:|...               ||:||||               .|||.|.:.:|     ..||.
Mouse   137 SAAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRY-----PKPLA 196

  Fly   412 THAGHIVDRTHLYWPGLQGLVANPIAWRE-RLSNTMSANLSQSHQHHPSNDKDGKKKHTRPTFSG 475
            ...|    ||.::||   |::.:| .||: ||:.|       .||.....|||||:|||||||||
Mouse   197 ELPG----RTPIFWP---GVMQSP-PWRDARLACT-------PHQGSILLDKDGKRKHTRPTFSG 246

  Fly   476 QQIFALEKTFEQTKYLAGPERAKLAYALGMSESQVKVWFQNRRTKWRKRHAAEMATAKRKQDD-- 538
            ||||||||||||||||||||||:|||:|||:|||||||||||||||||:|||||||||:|||.  
Mouse   247 QQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDSET 311

  Fly   539 --MGG-----DNDGDCSETMD--SDNESLDMGESPAQNKRCRSNSSGS 577
              :.|     ::|.|.::.:|  ||:|.:      .|..:...:|.||
Mouse   312 ERLKGTSENEEDDDDYNKPLDPNSDDEKI------TQLLKKHKSSGGS 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HGTXNP_001368954.1 ROM1 179..>388 CDD:227709 44/155 (28%)
Homeobox 469..523 CDD:395001 50/53 (94%)
Nkx6-1NP_659204.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..136 25/106 (24%)
Repressor domain. /evidence=ECO:0000250 102..269 71/186 (38%)
Homeobox 240..293 CDD:278475 49/52 (94%)
DUF3381 <291..345 CDD:288694 24/59 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 295..365 23/65 (35%)
Involved in DNA-binding. /evidence=ECO:0000250 307..365 13/53 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 117 1.000 Domainoid score I5884
eggNOG 1 0.900 - - E1_KOG0850
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001882
OrthoInspector 1 1.000 - - otm44315
orthoMCL 1 0.900 - - OOG6_109928
Panther 1 1.100 - - LDO PTHR24340
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.810

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