DRSC/TRiP Functional Genomics Resources

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Protein Alignment HGTX and nob-1

DIOPT Version :9

Sequence 1:NP_001368954.1 Gene:HGTX / 53446 FlyBaseID:FBgn0040318 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_001369824.1 Gene:nob-1 / 176641 WormBaseID:WBGene00003779 Length:243 Species:Caenorhabditis elegans


Alignment Length:212 Identity:56/212 - (26%)
Similarity:84/212 - (39%) Gaps:54/212 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   340 GSSSSSSTTTTNTNSQGAPNPHGIDTILSKPPPVTSAGLSALTGAGIPRFSIA------------ 392
            |.|.|...:.|.::.|.||:..|          :...|.:.:.|.|..|...|            
 Worm    43 GESRSERESETGSSPQLAPSSTG----------MVMPGTAGMYGFGPSRMPTANEFGMMMNPVYT 97

  Fly   393 ------AAAAGMAQYLSQSQGAPLKTHAGHIVDRTHLYWPGLQGLVAN---PIAWRERLSNTMSA 448
                  .|:.|...|     |.|.:..|.:.:       |.|.|.:::   |..     :.:.:|
 Worm    98 DFYQNPLASTGWYSY-----GQPYQFTANYSI-------PSLDGNLSDITIPTT-----AGSSAA 145

  Fly   449 NLSQSHQHHP-SNDKDGKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMSESQVKV 512
            ....:..|.| :...|||||  |..:...||..||..:...:||....|::|:..|.:.|.||||
 Worm   146 TTPNAAMHLPWAISHDGKKK--RQPYKKDQISRLEYEYSVNQYLTNKRRSELSAQLMLDEKQVKV 208

  Fly   513 WFQNRR---TKWRKRHA 526
            ||||||   .|.|:||:
 Worm   209 WFQNRRMKDKKLRQRHS 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HGTXNP_001368954.1 ROM1 179..>388 CDD:227709 11/47 (23%)
Homeobox 469..523 CDD:395001 22/56 (39%)
nob-1NP_001369824.1 Homeobox 165..219 CDD:395001 22/55 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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