DRSC/TRiP Functional Genomics Resources

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Protein Alignment HGTX and Cdx4

DIOPT Version :9

Sequence 1:NP_001368954.1 Gene:HGTX / 53446 FlyBaseID:FBgn0040318 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_031700.1 Gene:Cdx4 / 12592 MGIID:88362 Length:282 Species:Mus musculus


Alignment Length:278 Identity:76/278 - (27%)
Similarity:108/278 - (38%) Gaps:68/278 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   313 GGSSASANGLSYSHSPNSHLISDRGSGGSSSSSSTTTTNT--NSQGAP-----NPHGIDT-ILSK 369
            ||||.:..|.|            .|||....:|:.|....  :..|.|     :|||... ..|.
Mouse    22 GGSSTAGVGTS------------GGSGSPLPASNFTAAPVYPHYVGYPHMSNMDPHGPSLGAWSS 74

  Fly   370 P--PP----VTSAGLSALTGAGIPRFSIAAAAAGMAQY--LSQSQGAPLKTHAGHIVDRTHLYWP 426
            |  ||    .|..|..:..|. :|...:.:...|...|  |..:.||   ::.|.:.|...    
Mouse    75 PYSPPREDWSTYPGPPSTMGT-VPMNDMTSPVFGSPDYSTLGPTSGA---SNGGSLPDAAS---- 131

  Fly   427 GLQGLVANPIAWRERLSNTMSANLSQSHQHHP---------SNDKDGKKKHTRPTFSGQQIFALE 482
              :.||:..       |.|..|......:|.|         ...|...|:..|..::..|...||
Mouse   132 --ESLVSLD-------SGTSGATSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELE 187

  Fly   483 KTFEQTKYLAGPERAKLAYALGMSESQVKVWFQNRRTKWRKRHAAEMATAKRKQ-DDMGGDNDGD 546
            |.|...:|:....:::||..||:||.|||:||||||.|.||     |...|..| ::.||     
Mouse   188 KEFHCNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERK-----MIKKKISQFENTGG----- 242

  Fly   547 CSETMDSDNESLDMGESP 564
               ::.||:.|:..||.|
Mouse   243 ---SVQSDSGSISPGELP 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HGTXNP_001368954.1 ROM1 179..>388 CDD:227709 23/88 (26%)
Homeobox 469..523 CDD:395001 23/53 (43%)
Cdx4NP_031700.1 Caudal_act 13..160 CDD:309740 38/166 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 13..36 7/25 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 98..156 14/73 (19%)
Homeobox 175..227 CDD:306543 23/51 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0850
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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