DRSC/TRiP Functional Genomics Resources

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Protein Alignment HGTX and nkx2-4

DIOPT Version :10

Sequence 1:NP_001368954.1 Gene:HGTX / 53446 FlyBaseID:FBgn0040318 Length:587 Species:Drosophila melanogaster
Sequence 2:XP_002939478.1 Gene:nkx2-4 / 100495653 XenbaseID:XB-GENE-487481 Length:343 Species:Xenopus tropicalis


Alignment Length:385 Identity:84/385 - (21%)
Similarity:123/385 - (31%) Gaps:156/385 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 PCQTSESASPPPQGQNDY----SPENLSSQRAKFQHHHGVNPLALHNANHAGNPGC------HNN 280
            |...::..||..:....:    |..||||            ||..:...|....|.      ||.
 Frog    10 PFSVTDILSPIEETYKKFGGMESTGNLSS------------PLGAYRQTHVSQTGMQQHSMGHNA 62

  Fly   281 NNHMDHKLPLSFLGPPLAALHSMTTEMKGQGVGGSSASANGLSYSHSPNSHLISDRGSGGSSSSS 345
            .....:.:|           ||::....| .:||   ..||               |.|......
 Frog    63 TVTTTYHMP-----------HSVSQFSHG-AMGG---YCNG---------------GIGNMGDIP 97

  Fly   346 STTTTNTNSQGAPNPHGIDT---------ILSKPPPVTSAGLSALTGAGIPRFSIAAAAAGMAQY 401
            |...|..||..|...:|.:|         .:.....:..||:..|.|       ||.||..|   
 Frog    98 SYQDTMRNSAAATGWYGANTDPRYSTISRFMGPSTGMNMAGMGTLQG-------IAEAAKSM--- 152

  Fly   402 LSQSQGAPLKTHAGHIVDRTHLYWPGLQGLVANPIAWRERLSNTMSANLSQSHQHHPSNDKDGKK 466
                  |||  ||                                                 ..:
 Frog   153 ------APL--HA-------------------------------------------------APR 160

  Fly   467 KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMSESQVKVWFQNRRTKWRKRHAAEMAT 531
            :..|..||..|::.||:.|:|.|||:.|||..||..:.::.:|||:||||.|.| .||.|.:..|
 Frog   161 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYK-MKRQAKDKVT 224

  Fly   532 AKRKQDDMGGDNDGDCSETMDSDNESLDMGESPAQ---------NKRCRSNSSGSSQQQQ 582
            .:.:|:                  .:|...:||.:         .|.|:::|:.|:..||
 Frog   225 QQLQQE------------------SNLCQQQSPRRVAVPVLVKDGKPCQNSSNTSTPNQQ 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HGTXNP_001368954.1 ROM1 179..>388 CDD:227709 35/180 (19%)
Homeodomain 465..523 CDD:459649 25/57 (44%)
nkx2-4XP_002939478.1 Homeodomain 161..217 CDD:459649 25/56 (45%)

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