DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and PUB1

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_014382.1 Gene:PUB1 / 855716 SGDID:S000004961 Length:453 Species:Saccharomyces cerevisiae


Alignment Length:114 Identity:33/114 - (28%)
Similarity:55/114 - (48%) Gaps:2/114 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAM 84
            |...:|.|.:|......|.||..|:........::..|..|..|||:.||.|..:.||::|:::|
Yeast   159 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 223

  Fly    85 DGRMLDGRELRVQMARYGRPSSPTRSSSGRRGGGGGGGSGGRRRSRSRS 133
            .|:.|:||.||:..|  .:..:...::..:|...|....||.|:..|.:
Yeast   224 QGQDLNGRPLRINWA--AKRDNNNNNNYQQRRNYGNNNRGGFRQYNSNN 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 25/71 (35%)
PUB1NP_014382.1 RRM1_PUB1 77..150 CDD:410026
RRM2_PUB1 161..240 CDD:410031 26/80 (33%)
RRM3_PUB1 341..414 CDD:410033
Blue background indicates that the domain is not in the aligned region.

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