DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and GBP2

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_009916.1 Gene:GBP2 / 850346 SGDID:S000000517 Length:427 Species:Saccharomyces cerevisiae


Alignment Length:108 Identity:34/108 - (31%)
Similarity:46/108 - (42%) Gaps:18/108 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 GGGAGGLGAARPP-------PRIDGMV-----SLKVDNLTYRTTPEDLRRVFERCGEV--GDIYI 54
            ||..||.|....|       .:.|...     |:.|.|||:..|||||:.:|...|||  .||..
Yeast    91 GGRGGGRGRTLGPIVERDLERQFDATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIIT 155

  Fly    55 PRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQ 97
            .:..:    ||...|.|......:||:...||.:...|:|.|:
Yeast   156 SKGHH----RGMGTVEFTKNESVQDAISKFDGALFMDRKLMVR 194

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 25/73 (34%)
GBP2NP_009916.1 RRM1_HRB1_GBP2 121..197 CDD:410184 27/78 (35%)
RRM2_HRB1_GBP2 218..292 CDD:410185
RRM3_HRB1_GBP2 347..425 CDD:410186
Blue background indicates that the domain is not in the aligned region.

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