DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SC35 and AT1G60000

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_176208.1 Gene:AT1G60000 / 842294 AraportID:AT1G60000 Length:258 Species:Arabidopsis thaliana


Alignment Length:112 Identity:38/112 - (33%)
Similarity:55/112 - (49%) Gaps:12/112 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSNGGGAGGLGAA-------RPPPRIDGMV-----SLKVDNLTYRTTPEDLRRVFERCGEVGDIY 53
            :.|..|...||.|       :|.|..:.:.     .|.|.||::..|.|.|...|..||:|....
plant   143 IDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGAR 207

  Fly    54 IPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMAR 100
            :..|..|..|||:.||.:..|.:.|.|||::||..|:||.:||.:|:
plant   208 VVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 29/71 (41%)
AT1G60000NP_176208.1 RRM_SF 86..165 CDD:473069 5/21 (24%)
RRM 178..257 CDD:440488 31/77 (40%)

Return to query results.
Submit another query.