DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and SC35

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_201225.1 Gene:SC35 / 836541 AraportID:AT5G64200 Length:303 Species:Arabidopsis thaliana


Alignment Length:205 Identity:92/205 - (44%)
Similarity:113/205 - (55%) Gaps:49/205 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSNGGGAGGLGAARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 65
            ||:.|.:|       ||.|....||.|.|:|:|||.:||..:|.:.|:|.|::|||||.|.:|||
plant     1 MSHFGRSG-------PPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRG 58

  Fly    66 FAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRPSSPTRSSSGRRGGGGGGGSGGR---- 126
            |||||:..|.:|..|:|.:|||::||||:.||.|:|| |::...|.             ||    
plant    59 FAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG-PNAEKISK-------------GRVVEP 109

  Fly   127 ----RRSRSRSPMRRRSRSPRR-RSYSRSRSP-GSHSPERRSKFSRSPVRGDSRNGIGSGSGGLA 185
                ||||||||  |||||||| ||..|.||| .|.||.|||       |.|.|.         .
plant   110 PPKSRRSRSRSP--RRSRSPRRSRSPPRRRSPRRSRSPRRRS-------RDDYRE---------K 156

  Fly   186 PAASRSRSRS 195
            ....||||||
plant   157 DYRKRSRSRS 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 38/71 (54%)
SC35NP_201225.1 RRM_SRSF2_SRSF8 18..90 CDD:409751 36/71 (51%)
PHA03307 <204..>303 CDD:223039
Blue background indicates that the domain is not in the aligned region.

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